The pwiz from bishwambharsen

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The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

License: Apache License 2.0

Batchfile 0.10% Shell 0.06% C++ 36.03% C 12.84% Python 1.35% Makefile 0.02% DIGITAL Command Language 0.01% Objective-C 0.01% Yacc 0.03% IDL 0.01% XSLT 0.01% CMake 0.01% HTML 1.68% Objective-C++ 0.01% Gherkin 0.02% C# 46.42% Java 1.16% Gnuplot 0.01% Assembly 0.01% R 0.27%

pwiz's Introduction

The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that facilitate proteomics data analysis.

The libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations.

Core code and libraries are under the Apache open source license; the vendor libraries fall under various vendor-specific licenses.

Features

reference implementation of HUPO-PSI mzML standard mass spectrometry data format
supports HUPO-PSI mzIdentML 1.1 standard mass spectrometry analysis format
supports reading directly from many vendor raw data formats (on Windows)
modern C++ techniques and design principles
cross-platform with native compilers (MSVC on Windows, gcc on Linux, darwin on OSX)
modular design, for testability and extensibility
framework for rapid development of data analysis tools
open source license suitable for both academic and commercial projects (Apache v2)