bit-vs-it Goto Github PK

mapp

MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.

metbrewer

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

mfp

Mollecular Functional Portraits

ml-nlp

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。

mocaseq

Analysis pipelines for cancer genome sequencing in mice.

multiplexed_crispri_enhancernet

mutationtimer

An R package to time somatic mutations

mutsigextractor

An R package for extracting mutational signatures from vcf files

mutspot

neural_dv_atac

Scripts for genomic data analysis in Delás et al (2022) Dev Cell

neuronmotif

NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks

nichenetr

NicheNet: predict active ligand-target links between interacting cells

noack_et_al_natneuro2021

Publication Page for the Noack et al. 2021 Nature Neuroscience paper

nt-seq

The analysis script for NT-seq

panchip

Pan-ChIP-seq Analysis of Peak Sets

paradigm

PAthway Representation and Analysis by Direct Inference on Graphical Models

pcawg-ega-submission

Git repository for tracking PCAWG data submission to EGA

pdac-progression

peakachu

Genome-wide contact analysis using sklearn

peaksat

R package to do peak saturation analysis for ChIP-seq.

peppro

A modular, containerized pipeline for PRO-seq data processing

phylovelo

PhyloVelo, Phylogeny-based transcriptomic velocity of single cells

plot1cell

plotgardener

pnet_prostate_paper

P-NET, Biologically informed deep neural network for prostate cancer classification and discovery

polyapipe

polyApipe

postre

POSTRE: Prediction Of STRuctural variant Effects

primary-met-wgs-comparison

Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.

psirc

Full-length linear and circular transcript isoform reconstruction and quantification

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks