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language-python

A parser for Python 2.x and 3.x written in Haskell

language-python-test

Code for testing the language-python library

lbc_var_annotate_sens_spec

lfg

A lagged fibonacci generator in Haskell

lynch_gatk

GATK variant calling pipeline for Suspected Lynch Syndrome project

make-pbs-script

Automate the creation of simple PBS scripts, using a question and answer dialog

md5_pipeline

A pipeline for running md5 checksums over many files in parallel

methpat

A program for summarising CpG methylation patterns

methyl_bismark_methpat

A pipeline for running bismark and methpat on methylation data

ministg

Ministg is an interpreter for a high-level, small-step, operational semantics for the STG machine.

mpi-article-monad-reader

Article about the Haskell MPI bindings for the Monad.Reader magazine

ngs-pipeline

Next generation sequencing pipeline

obs-gyn-website

offtarget

Plot offtarget reads for targeted sequence data

operator_precedence_parser

ovarian_cancer_pipeline

Somatic variant calling pipeline for ovarian cancer

pbs2slurm

Tool for converting PBS/Torque scripts into SLURM scripts

pdb_rename_chain

pipeline_base

Infrastructure for bioinformatics pipelines based on Ruffus

pipeline_yaml

plot_enrolments

Plot a graph of student enrolments using downloaded CSV file from LMS

preceptweb

Website for the PRECEPT project

primer_dimer_aligner

pseudofinder

Find processed pseudogenes in DNA sequencing data using input structural variants

pyray

Ray tracer in Python

python_cheat_sheet_notebook

Python cheat sheet notebook

python_physics_sample_solutions

python_rainfall_ipython

IPython example using rainfall data

raft_hotspots_se

Compute DNA double stranded breakpoint hotspots from RAFT sequencing data

rover

Read overlap variant caller.