blt2114/protdiff_smcdiff

Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/abs/2206.04119

protdiff_smcdiff's Issues

RMSD for motiff

Do you have the code to calculate the RMSD fr motiff?

A problem about the package"tree"

Could you give me some details about the package 'tree' you use, including its full name, which category it belongs to, e.g. I keep having problems trying to parse it with the ipython notebook
ok I find it

What means "Kt_1 = self._diffuser.K ** t"?

In torch_train_diffusion.py, Line 279

Kt_1 = self._diffuser.K ** t

I think there is no attribute 'K' on Diffuser class.
Is that bb_mask_2d or something like that?
What attribute K means?