bogovicj Goto Github PK
Name: John Bogovic
Type: User
Company: HHMI Janelia Research Campus
Location: Washington DC metro area
John Bogovic's Projects
analysissuitebin
These are additional perl/shell scripts that are intended to support my AnalysisSuite package
awesome-janelia-software
A curated list of awesome Janelia software
bdv-sandbox
bigdataviewer experiments
beamer-theme-janelia
A minimalist and modern Beamer theme
bigcat
Collaborative volume annotation and segmentation with BigDataViewer
bigdataviewer-biop-tools
Another repo for bdv tools.
bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
bigdataviewer-playground
bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.
bigdataviewer_fiji
Fiji plugins for starting BigDataViewer and exporting data.
bigstitcher
ImgLib2/BDV implementation of Stitching for large datasets
bigwarp
A tool for manual pointwise deformable registration using bigdataviewer.
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
bogovicj.github.io
caffe-janelia
cosem
Java tools
descriptor_based_registration
dotfiles
my settings
drosadultbraindomains
Drosophila Adult Brain Domains
elastixmodelzoo
Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix
em-superresolution-keras
Super-resolve anisotropic EM data along low-res axis with deep learning
embobioimage2023_registration
Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course
fiji-plugin-elastixwrapper
fiji-scripts
A wild collection of useful and partially broken scripts for Fiji and TrakEM2
getyourbrainstraight
Get Your Brain Straight Neuroimage Registration Workshops and Hackathons
hhmi-exp
Experimental code
hot-knife
i2k-tutorial
Use N5, ImgLib2-Cache, and Spark
i2k2020-imglib2-advanced
ijp-imagetoatlas
2D sections to 3D atlas registration with Fiji and QuPath
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