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imagej-common

ImageJ core data model

imagej-itk

ITK integration for ImageJ

imagej-ops

ImageJ OPS: A framework for reusable algorithms

imagej-ops-sandbox

Experiments and Examples with ops

img_register

imglib-tests

ImgLib tests that are not bound to specific ImgLib projects

imglib2

A generic next-generation Java library for image processing

imglib2-algorithm

Image processing algorithms for ImgLib2

imglib2-blog

ImgLib2 news and tutorials

imglib2-cache

Cache interfaces and java.lang.ref based implementation.

imglib2-cache-examples

Examples that illustrate imglib2-cache and cached images

imglib2-ij

Translation between ImgLib & ImageJ data structures (both 1.x and 2)

imglib2-realtransform

imglib2-roi

Regions of interest (ROIs) and labelings for ImgLib2

imglib2-splines

imjoy-rpc

The RPC library used in ImJoy.

io

itkelastix

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

janeliadatastandards

A central hub for Janelia's bioimaging schemas, standards, and data formats.

janeliamlcourse

Janelia machine learning course resources

jitk-tps

A java port of the ITK thin plate spline implementation.

makeaveragebrain

Make average template brains using CMTK’s avg_adm tool

mobie-io

mobie-viewer-fiji

mpicbg

Fiji module for image transformation and related algorithms

multiview-reconstruction

Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

n5

Not HDF5

n5-blosc

Blosc compression for N5

n5-google-cloud

N5 library implementation using Google Cloud Storage backend.

n5-hdf5

Best effort N5 implementation on HDF5 files (despite the irony).