Comments (1)
Hey @gregcaporaso, thanks for pointing that out - will adapt!
from q2-assembly.
Related Issues (20)
- specify default values in function definition HOT 4
- Enable multiprocessing in `evaluate-contigs` HOT 1
- Expose more QUAST parameters
- `evaluate-contigs` should accept reference seqs
- outdated help text on evaluate-contigs HOT 1
- invalid sample name assumption causes failure in `evaluate-contigs`
- `evaluate-contigs` fails with `OSError: [Errno 28] No space left on device` HOT 8
- `evaluate-contigs` fails on the most recent QUAST version
- expose additional visualizations generated by QUAST in the `evaluate-contigs` visualization
- MAINT: ensure that input names are consistent across actions
- BUG: `index-contigs` fails if any input files are empty HOT 4
- Cannot download some files from the `evaluate-contigs` qzv
- update help text for `assemble-spades --p-meta` HOT 3
- BUG: `assembly assemble-spades` auto-detection of phred-offset error
- BUG: index-contigs collects only .fa files
- BUG: action `generate-reads` is missing the `pysam` dependency HOT 3
- Update help text for `assemble-spades --p-threads --p-memory`
- BUG: Download buttons for the `assembly evaluate-contigs` visualization not producing PDFs, etc.. HOT 2
- BUG: `MultiMAGSequencesDirFmt` does not have a manifest in `index_mags`
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from q2-assembly.