Related Issues (20)
- Implement FeatureData[KEGG] type
- Implement FeatureData[MAG] type
- Update CI to follow the other repos
- add database validation to the Kraken2DB format
- add formats/types required by Kaiju
- add `FeatureMap` and `FeatureMap[MAGtoContigs]` types
- TypeError: BLAST6 is not a variant of SampleData.field['type'] HOT 2
- Duplicate semantic type HOT 1
- add formats that make sample (or other) ids explicit HOT 7
- ENH: add eggnog/diamond DB validation
- ENH: Semantic type for HMMER database
- ENH: Update Semantic Type for Diamond DB HOT 2
- ENH: add a `genome_dict` method on all `GenomeData`-linked formats
- ENH: Semantic Type for NCBI protein-taxonomy data
- ENH: Semantic Type for taxa specific diamond DB
- ENH: Update `NCBITaxonomyDirFmt` to accomodate data-version file HOT 2
- ENH: Semantic Type for `fetch-busco-db`'s output
- ENH: introduce the `FeatureData[Contig]` semantic type
- ENH: add `sample_dict` method to the `MultiFASTADirectoryFormat` format
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