Related Issues (20)
- Add support for gtdb release 214 HOT 1
- Sequence identifier warnings from `get-ncbi-data`.
- orient-seqs: accept FASTQ data as input HOT 2
- Authentication error with Option 2: Install within QIIME 2 environment HOT 1
- Remove heavy dependencies HOT 5
- Update help text for clarity: `dereplicate --p-mode super`
- ENH: Add option to download `ssu_all_<release>.tar.gz` from GTDB. HOT 1
- ENH: Add option to download the corrected `214.1` GTDB database. HOT 2
- Rescript installation in q2-amplicon-2023.9 HOT 1
- ENH: `trim-alignment`, add `--p-addfragments` flag when using primer search option. HOT 1
- which rescript version for qiime2 2022.11? HOT 2
- full SILVA LSU download HOT 3
- ENH: Add the ability to fetch the latest GTDB database (v220) to `get-gtdb-data` HOT 1
- get-ncbi-data Command Error HOT 1
- get-ncbi-genomes: custom rank information
- ENH: extract-seq-segments add param "min_coverage" HOT 1
- ENH: Add SILVA 138.2 to `get-silva-data`
- ENH: Add support to fetch data from BV-BRC.
- SILVA 138.2 ssu-nr99 database, only 6 levels HOT 1
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