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R Interface to Ensembl Variant Effect Predictor
Home Page: https://bioconductor.org/packages/ensemblVEP
This project forked from bioconductor/ensemblvep
R Interface to Ensembl Variant Effect Predictor
Home Page: https://bioconductor.org/packages/ensemblVEP
========================= Installing ensemblVEP ========================= To use ensemblVEP, the Ensembl Variant Effect Predictor (VEP) software must be installed. ---------------------------------- Download and Install Ensembl VEP ---------------------------------- Follow the download and installation instructions on this page: http://uswest.ensembl.org/info/docs/tools/vep/script/index.html On Windows you may need to install the perl modules perl-DBD-mysql and perl-DBI if you do not have them. All of this is documented on the Ensembl VEP web page. ---------------------------------- Confirm installation ---------------------------------- Check that vep is executable and in your path. This may involve modifying .bashrc and / or .profile files. On Unix and Mac: vep On Windows: perl vep Note: Versions Ensembl release <88 the name of the script is variant_effect_predictor.pl
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