brendelgroup / intervalloci Goto Github PK
View Code? Open in Web Editor NEWSupplemental documentation for the iLocus paper
Supplemental documentation for the iLocus paper
The markdown bash commands seems to be using a file structure that is incompatible with the rest of the project. I am guessing this was done separately and merged, but the file structure was never fixed. When I reproduced the results, I recreated the file structure described in the md and copied over the relevant data files. I believed this was the simplest solution due to how you've set up the BLAST search. If you agree with this, I can submit a PR.
The chlorophyta+ file has additional species beyond the 9 species in chlorophyta batch in GenHub. However, the corresponding scripts and markdown only seem to use the 9 in the original batch.
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