brian-team/brian2_paper_examples

Examples for Brian 2 paper

This repository contains interactive examples in the form of Jupyter notebooks that demonstrate the use of the Brian simulator for neural modeling.

Running these examples needs an installation of Brian 2 (see documentation at brian2.readthedocs.io), together with libraries for plotting of the results (plotly and matplotlib).

You can install all necessary dependencies by creating a conda environment from the provided environment file:

$ conda env create -f environment.yml

To run the notebooks in the binder environment, without requiring any installation on your local computer, use the following link:

The code and data in this repository are dual-licensed under the Creative Commons Attribution 4.0 International Public License and the MIT license, you can chose between them if you use this work.

brian2_paper_examples's Issues

How to make use of the files generated from 'cpp_standalone' mode

Hi,

I ran example 1 and got a folder called 'example_1'. From the tutorial I think the folder is used to store the data (eg. voltage, spiking time) collected from the running process, am I right? If so, how to use the data later without running the code again?

Best,
Yiming

Fail to Repeat Example 1

Hi,

I copied and pasted all codes from

example_1_pyloric_network.ipynb

and ran in Spyder with Python3.7.

I didn't run the plotting codes to test if the codes work. There is an error, and the error message says

Cannot find Microsoft Visual Studio, You can try to set the path to vcvarsall.bat via the codegen.cpp.msvc_vars_location preference explicitly.

Should I use Visual Studio instead?