Scripts, configuration, and code contributions used to run the McCarroll Lab's Cromwell instance.
This Cromwell instance supports running Docker/Singularity containers on either the Broad UGER cluster or Google Cloud.
Custom scripts for launching and monitoring the McCarroll Cromwell server and jobs.
The McCarroll Cromwell configuration files minus any secrets.
A submodule pointing to the custom branch of
broadinstitute/cromwell running on the McCarroll
Cromwell instance. Often this branch will contain comments ahead of the develop
branch with added
features under review by the Cromwell developers.
NOTE: Unlike changes merged to the upstream develop
branch changes in this submodule should be
considered experimental and used with care!