Related Issues (20)
- flair quantify problem error HOT 3
- ValueError in filter_isoforms_by_proportion_of_gene_expr.py
- Collapse step didn't output a gtf file without a reference annotation
- FLAIR missing isoforms HOT 1
- Process termination at Step 5/5 in flair correct without error messages HOT 1
- FLAIR plot_isoform_usage transcripts flipped HOT 1
- How does flair quantification work?
- Flair collapse runs so slow with big fastq file even though I split bed by chromosome
- Odd result after splitting bed by chromosomes
- Set `--annotation_reliant` but still got novel single-exon genes
- No output from flair align after specifying --output
- flair collapse failing but error message isn't informative
- Running FLAIR with multiple samples
- Flair align & correct producing empty results & no error HOT 1
- Some question about FLAIR2 (doi: 10.1186/s13059-024-03301-y)
- failed test for flair correct
- flair correct - FileNotFound %s_inconsistent.bed HOT 1
- plot_isoforms_usage duplication of isoforms in plot HOT 2
- Extremely high cell barcode associations
- Exon with negative length
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from flair.