Related Issues (20)
- Flair collapse runs so slow with big fastq file even though I split bed by chromosome
- Odd result after splitting bed by chromosomes
- Set `--annotation_reliant` but still got novel single-exon genes
- No output from flair align after specifying --output
- flair collapse failing but error message isn't informative
- Running FLAIR with multiple samples
- Flair align & correct producing empty results & no error HOT 1
- Some question about FLAIR2 (doi: 10.1186/s13059-024-03301-y)
- failed test for flair correct
- flair correct - FileNotFound %s_inconsistent.bed HOT 1
- plot_isoforms_usage duplication of isoforms in plot HOT 2
- Extremely high cell barcode associations
- Exon with negative length
- Failed at counting step for annotated isoform read support
- Question on TSS/PAS support
- Flair collapse does not support .fa.gz
- flair --help throws runtime error
- regarding id with '-0' at the end of transcript id
- conda install issues on Mac ARM systems HOT 1
- Flair collapse path issues on EasyBuild install. HOT 2
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from flair.