Name: Ben Siranosian
Type: User
Company: Deep Origin
Bio: Head of Bioinformatics, Deep Origin. Previously at Loyal, PhD in @bhattlab, Stanford Genetics. Interested in genomics, epigenetics, microbiome.
Twitter: bensiranosian
Location: Palo Alto, CA
Blog: https://www.bsiranosian.com
Ben Siranosian's Projects
Tools developed in computational biology courses at Brown
deep learning on enhancer and promoter motifs
Epicuticular waxes, oh my!
The Institute of Disease Modeling interdisciplinary collaboration with Elizabeth Thiele (Vassar) and James Cotton (Wellcome Sanger Institute) to maximize the value of epidemiological and genetics data to understand Guinea worm transmission in Chad.
Analysis of metagenomic sequencing data
Repository to host tool-specific module files for the Nextflow DSL2 community!
Simulation of chromatin folding via loop extrusion and polymer condensation
Palindromes in mycobacteriophages
Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.
a binding for using AWS Simple Storage Service (S3) from Google Apps Script
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Useful utilities for using the SCG cluster.
Tango: alignment-free analysis of mycobacteriophage genomes
Alignment-free analysis of mycobacteriophage genomes
Analysis of using VIX and SPX options to hedge a portfolio