Comments (2)
btmartin721
commented on June 24, 2024
Hi Ludo,
That sounds like maybe a versioning issue with GSL. What version of GSL are you using? Also, are you running this on a high-performance computing node? If so, are there any other GSL versions that you can load with a pre-built module?
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btmartin721
commented on June 24, 2024
Actually I take that back. It looks to me like your input files aren't formatted correctly. The bgc_p1in.txt and bgc_p2in.txt files just contain the locus names, but they have what is currently in your loci.txt file, and vice versa. Also, I think there is only one population (pop0) present in the data, whereas there should be discrete populations defined in p1in.txt, p2in.txt, and admixedin.txt.
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Related Issues (17)
- Hybrid Index HOT 1
- Error with parsing alleles depth HOT 7
- Error HOT 9
- get_bgc_outliers error HOT 15
- Rename snps$crazy.a and snps$crazy.b to something more intuitive
- Rebuild docker image with updates to vcf2bgc.py HOT 1
- Fix run_bgc.sh estpost LnL file naming HOT 1
- run bgc error in docker HOT 3
- ClineHelpR R package conda install? HOT 1
- jinja2 HOT 2
- R function: combine_bgc_output HOT 2
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- Add vcf2bgc script
- vcf2bgc.py file HOT 6
- pafscaff HOT 6
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