Assessing the convergence of runs

[lpittet92]

Assessing the convergence of runs

[tkchafin]

I would suggest a longer run with a larger burn-in, and increase the thinning parameter (2nd MCMC in particular looks to have a lot of autocorrelation)

[lpittet92]

That was fast !!

Thank you very much, I will give it a try and let you know how it goes :)

[lpittet92]

Hello again,

I have been trying a lot of things since the last message... Now my runs converge. When I included all the populations of the hybrid zone, BGC identified only one population as hybrid (hybrid index of 0.5), and all the other populations as P1 (average 0.98 HI). So I ran it again with only the hybrid pop and I get the result attached.
FWH_FINAL_all_hiXphi_alphaAndBeta-2.pdf

I am not sure if everything ran normally. Do you have any idea what is happening here ?

Thanks