cabsel/calista

CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis

CALISTA provides a user-friendly toolbox for the analysis of single cell expression data.

Please visit CALISTA website for more info about installation and how to run CALISTA.

License

Redistribution and use in source and binary forms, with or without modification, are permitted provided agreeing to the BSD 3-Clause Style License.

References

Papili Gao N., Hartmann T., Fang T. and Gunawan R., CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis. Abstract

Acknowledgement

This work is supported by funding from Swiss National Science Foundation.

calista's Issues

Failed R installation

Hello, I am trying to install calista in R and receive the following error:

* installing *source* package 'calista' ...
** using staged installation
** libs

*** arch - i386
C:/RBuildTools/3.5/mingw_32/bin/gfortran   "-fno-stack-protector"   -O3  -mtune=generic -c  greedy.f95 -o greedy.o
greedy.f95:714.17:

real*8 cell_prob(nvars,expected_clusters), bbb(q,expected_clusters)
                 1
Error: Variable 'nvars' cannot appear in the expression at (1)
make: *** [C:/PROGRA~1/R/R-36~1.0/etc/i386/Makeconf:234: greedy.o] Error 1
ERROR: compilation failed for package 'calista'

I am using R ver 3.6 and RStudio ver 1.2.

Thanks!