camiwilliams/baal

Using approximate bayesian posteriors in deep nets for active learning

Bayesian Active Learning (Baal)

BaaL is an active learning library developed at ElementAI. This repository contains techniques and reusable components to make active learning accessible for all.

Read the documentation at https://baal.readthedocs.io.

You can also read our blog post.

Installation and requirements

BaaL requires Python>=3.6.

To install baal using pip: pip install baal

To install baal from source: pip install -e .

For requirements please see: requirements.txt.

What is Active Learning?

Active learning is a special case of machine learning in which a learning algorithm is able to interactively query the user (or some other information source) to obtain the desired outputs at new data points (to understand the concept in more depth, refer to our tutorial).

BaaL Framework

At the moment BaaL supports the following methods to perform active learning.

• Monte-Carlo Dropout (Gal et al. 2015)
• MCDropConnect (Mobiny et al. 2019)

Please see our Roadmap below.

The Monte-Carlo Dropout method is a known approximation for Bayesian neural networks. In this method, the dropout layer is used both in training and test time. By running the model multiple times whilst randomly dropping weights, we calculate the uncertainty of the prediction using one of the uncertainty measurements in src/baal/active/heuristics.py.

The framework consists of four main parts, as demonstrated in the flowchart below:

• ActiveLearningDataset
• Heuristics
• ModelWrapper
• ActiveLearningLoop

To get started, wrap your dataset in our ActiveLearningDataset class. This will ensure that the dataset is split into training and pool sets. The pool set represents the portion of the training set which is yet to be labelled.

We provide a lightweight object ModelWrapper similar to keras.Model to make it easier to train and test the model. If your model is not ready for active learning, we provide Modules to prepare them.

For example, the MCDropoutModule wrapper changes the existing dropout layer to be used in both training and inference time and the ModelWrapper makes the specifies the number of iterations to run at training and inference.

In conclusion, your script should be similar to this:

dataset = ActiveLearningDataset(your_dataset)
dataset.label_randomly(INITIAL_POOL)  # label some data
model = MCDropoutModule(your_model)
model = ModelWrapper(model, your_criterion)
active_loop = ActiveLearningLoop(dataset,
                                 get_probabilities=model.predict_on_dataset,
                                 heuristic=heuristics.BALD(shuffle_prop=0.1),
                                 ndata_to_label=NDATA_TO_LABEL)
for al_step in range(N_ALSTEP):
    model.train_on_dataset(dataset, optimizer, BATCH_SIZE, use_cuda=use_cuda)
    if not active_loop.step():
        # We're done!
        break

For a complete experiment, we provide experiments/ to understand how to write an active training process. Generally, we use the ActiveLearningLoop provided at src/baal/active/active_loop.py. This class provides functionality to get the predictions on the unlabeled pool after each (few) epoch(s) and sort the next set of data items to be labeled based on the calculated uncertainty of the pool.

Roadmap (Subject to change depending on the community.)

• Initial FOSS release with MCDropout (Gal et al. 2015)
• MCDropConnect (Mobiny et al. 2019)
• Bayesian layers (Shridhar et al. 2019)
• Unsupervised methods
• NNGP (Panov et al. 2019)
• SWAG (Zellers et al. 2018)

Re-run our Experiments

nvidia-docker build [--target base_baal] -t baal .
nvidia-docker run --rm baal python3 experiments/vgg_mcdropout_cifar10.py 

Use BaaL for YOUR Experiments

Simply clone the repo, and create your own experiment script similar to the example at experiments/vgg_experiment.py. Make sure to use the four main parts of BaaL framework. Happy running experiments

Dev install

Simply build the Dockerfile as below:

git clone [email protected]:ElementAI/baal.git
nvidia-docker build [--target base_baal] -t baal-dev .

Now you have all the requirements to start contributing to BaaL. YEAH!

Contributing!

To contribute, see CONTRIBUTING.md.

Who We Are!

"There is passion, yet peace; serenity, yet emotion; chaos, yet order."

At ElementAI, the BaaL team tests and implements the most recent papers on uncertainty estimation and active learning. The BaaL team is here to serve you!

• Parmida Atighehchian
• Frédéric Branchaud-Charron
• Jan Freyberg
• Rafael Pardinas
• Lorne Schell

Licence

To get information on licence of this API please read LICENCE