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IPython extension for running mothur commands in an IPython notebook
License: GNU General Public License v3.0
This project forked from schlosslab/ipython-mothurmagic
IPython extension for running mothur commands in an IPython notebook
License: GNU General Public License v3.0
Current implementation expects file type of actual file to match that requested by mothur. e.g. make.contigs() has an argument file
which takes a .files file, summary.seqs() has an argument group
which takes a .groups file.
feature/enable-current branch issue.
Parsing not handling when filetypes do not match the file arguments name, e.g. file=xxx.files, or fasta=xxx.align. This is the same root problem as issue #1.
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