- ๐ Hi, Iโm Rui
- ๐ Iโm interested in bioinformatic and data science
- ๐ฑ Iโm currently PhD candidate in city university of Hong Kong
- ๐ฐ make money ๐ฐ
- ๐ฌ master of Woolgathering ๏ผ็ญ็ฑ่ ็พๆฏ๏ผ
- ๐ซ How to reach me [email protected]
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pipeline.md
Trinity assembly
Assembly Vespertilio_sinensis
~/trinityrnaseq-v2.12.0/Trinity --seqType fq --left ../rawdata/QC/S7_1.clean.fq.gz,../rawdata/QC/S9_1.clean.fq.gz,../rawdata/QC/S11_1.clean.fq.gz,../rawdata/QC/S14_1.clean.fq.gz,../rawdata/QC/S15_1.clean.fq.gz,../rawdata/QC/S16_1.clean.fq.gz,../rawdata/QC/S18_1.clean.fq.gz,../rawdata/QC/S19_1.clean.fq.gz,../rawdata/QC/S20_1.clean.fq.gz,../rawdata/QC/S25_1.clean.fq.gz,../rawdata/QC/S26_1.clean.fq.gz,../rawdata/QC/S27_1.clean.fq.gz --right ../rawdata/QC/S7_2.clean.fq.gz,../rawdata/QC/S9_2.clean.fq.gz,../rawdata/QC/S11_2.clean.fq.gz,../rawdata/QC/S14_2.clean.fq.gz,../rawdata/QC/S15_2.clean.fq.gz,../rawdata/QC/S16_2.clean.fq.gz,../rawdata/QC/S18_2.clean.fq.gz,../rawdata/QC/S19_2.clean.fq.gz,../rawdata/QC/S20_2.clean.fq.gz,../rawdata/QC/S25_2.clean.fq.gz,../rawdata/QC/S26_2.clean.fq.gz,../rawdata/QC/S27_2.clean.fq.gz --CPU 30 --min_contig_length 150 --output Vespertilio_sinensis_trinity --max_memory 100G
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