Comments (4)
gregcaporaso
commented on May 27, 2024
Yes, I think so.
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gregcaporaso
commented on May 27, 2024
And we can probably remove some of the code at the time. I'll take this one.
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jairideout
commented on May 27, 2024
Thanks!
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nbokulich
commented on May 27, 2024
Closing this — This issue is way out of date, and UC is already included in assign_taxonomy.py
@jairideout and @gregcaporaso : I will be clearing out old issues in this repo... so you can ignore the string of issue closures that may follow this message...
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Related Issues (20)
- finalize mock community notebooks
- create script to translate a uc file into taxonomy assignments... HOT 1
- prototype specified prior testing for q2-feature-classifier HOT 1
- Fix trueish taxonomies for mock-9 and -10 by fixing taxonomy mapping. HOT 1
- add continuous integration HOT 1
- q2-feature-classifier sweep
- annotate sequence ids in trueish taxonomies notebook HOT 1
- is there a way to collapse labels/rows in the abundance heatmaps? HOT 1
- evaluate_results is slow, should only calculate new results HOT 1
- more unit tests! HOT 1
- evaluate_results: need to link parameters_ids and methods_ids
- How should we handle missing observations in taxonomy assignments during eval? HOT 1
- fungal precision/recall results are failing HOT 6
- Use CART to interpret parameter sweep results in the eval notebooks
- Update the README
- Stop generating space-taking, unnecessary files
- Correlation metrics are not available HOT 4
- missing translations in the matched-sequences-taxonomies.tsv? HOT 1
- Files not in the repository? HOT 1
- Issue with pip install HOT 1
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