gregcaporaso Goto Github PK

1955-11-05-sctest

Test of creating a Software Carpentry Workshop Website for the Teaching11 course

2017.06.15-qiime2-at-igs

2017.06.23-q2-fungal-tutorial

A quick fungal ITS analysis tutorial for QIIME 2

4cscc-ln

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

bc

Template for Software Carpentry bootcamp site repository.

bio450-qiime2-assignment

biom-format

The Biological Observation Matrix (BIOM) Format Project

built-iab

Repository for An Introduction to Applied Bioinformatics built notebooks.

built-iab-test

burrito-fillings

Application controllers for command line bioinformatics applications

cancer-microbiome-intervention-tutorial

JupyterBook for QIIME 2 FAES January 2022 workshop

cli

Command line interface for the book project (may eventually by jupyter-book)

clout

Automated testing system for development versions of QIIME, PyCogent, biom-format, and more.

cookiecutter-plugin-template

Cookiecutter template for initializing QIIME 2 plugin packages.

cual-id

Code to generate pdfs of barcodes, often used for labeling sampling tubes used in microbiome research

da-plots

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

data.qiime2.org

dendropy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

dev-docs

Developer documentation for QIIME 2

developing-with-qiime2

Developing with QIIME 2

diataxis-documentation-framework

A systematic approach to creating better documentation.

distributions

docs

Source repository for https://docs.qiime2.org

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

ete

ETE (Environment for Tree Exploration) is a python toolkit intended for tree analysis and visualization. It provides both a comprehensive API to manipulate and operate with trees in a programmatic way, as well as a number of command line tools to easily compare, annotate, modify or render tree images. ETE is currently developed as a research tool in the context of genomics and phylogenetics, providing several specific modules for orthology and paralogy prediction, NCBI taxonomy queries, multiple sequence alignment integration and more.

extensible-evaluation-framework-presentation

fq-manifestor

An attempt to ease the creation of QIIME 2 manifest files

genome-sampler