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ETE (Environment for Tree Exploration) is a python toolkit intended for tree analysis and visualization. It provides both a comprehensive API to manipulate and operate with trees in a programmatic way, as well as a number of command line tools to easily compare, annotate, modify or render tree images. ETE is currently developed as a research tool in the context of genomics and phylogenetics, providing several specific modules for orthology and paralogy prediction, NCBI taxonomy queries, multiple sequence alignment integration and more.
Home Page: http://etetoolkit.org
License: GNU General Public License v3.0