Example machine learning pipeline for the Prostate cANcer graDe Assessment (PANDA) Challenge
Update input/generate_cv_folds_config.yaml
then run
python generate_cv_folds.py
Update input/generate_tiles_config.yaml
then run
python generate_tiles.py
Update input/generate_cv_folds_config.yaml
with the session_dir
generated from step 1 and the tiles directory from step 2
python generate_tiles.py
update configurable files in input/tile_exp_1
for a training session or input/blend_exp_1
for blending experiments then run
./input/blend_exp_1/train_models.sh