cbeardsworth/atlastools2

Tools for pre-processing high-throughput animal tracking data.

Pre-processing Tools for High-throughput Animal Tracking Data

atlastools is an R package to pre-process high frequency animal tracking data. It is written and maintained by Pratik Gupte, at the University of Groningen's Theoretical Biology Group. While aimed at data from ATLAS systems, it works with any X, Y, TIME data.

Package documentation

The package functions are conveniently documented at the package website: https://pratikunterwegs.github.io/atlastools/

A Guide to Pre-procesing High-throughput Animal Tracking Data

Using atlastools to clean data before making biological inferences is covered in depth in the preprint Gupte et al. (2020) on bioRxiv: https://www.biorxiv.org/content/10.1101/2020.12.15.422876v2

Installation

# This package can be installed using devtools
install.packages("devtools")

devtools::install_github("pratikunterwegs/atlastools")