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ccna timeseries extraction
I recently find out if the atlas and the data are in the same space, it takes a split second for LabelsMasker to run. I think it is worth resampling the template before hand.
As title. The things we need are in release now!
See docs on derivatives:
https://bids-specification.readthedocs.io/en/stable/05-derivatives/03-imaging.html
In my denoising project I used the load_confounds API to load a range of denoising strategy. Let me know if you think it's a good idea to implement that.
On branch https://github.com/ccna-biomarkers/ccna_ts_extraction/tree/masker_with_input_atlas
The job fails because it tries to download difumo (CC node does not have connection to internet).
Even if pre-downloaded and because the atlas-path
param is already used to point to templateflow dir, this requires the atlas-path
directory filled with non-templateflow files (original difumo in nilearn
layout) resulting in a messy folder.
@htwangtw lmk when you have the PR to make the templateflow layout for original difumo.
OR write behind what you had in mind so I can work on it (download with tpltflow utility I suppose?).
Seems like the templateflow fetcher does not work with DiFuMo
.
To double check on another system.
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