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A comparison of different Oxford Nanopore basecallers
A read extraction and realignment tool for next generation sequencing data
Bioinformatics training resources
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
In the process of data analysis, it is always necessary to customize scripts to accomplish specific tasks.
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
Tools to process and analyze deep sequencing data.
Tools for working with fast5 files (nanopore data).
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A quality control analysis tool for high throughput sequencing data
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
Analysis pipeline for the GUIDE-seq assay. For news, see:
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
share materials with students
Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
MetaQC: the MeRIP-seq data analysis and quality control toolkit
R package for DNA methylation analysis
R package for user-friendly analysis and comparison of ONT data
Genome guided re-segmention and visualization for raw nanopore sequencing data.
Nanopore data assembler
Graphical OpenConnect client (beta phase)
PArallel Distributed Deep LEarning (PaddlePaddle核心框架,高性能单机、分布式训练和跨平台部署)
This is an updated mirror of the original PacBio Read Simulator
a toolkit for working with Oxford nanopore data
parallel c prinseq
Tools used to analyze data from nanopore-based experiments.
Package for fetching metadata and downloading data from SRA
SquiggleKit: A toolkit for manipulating nanopore signal data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.