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chebuu's Projects

3vte-model icon 3vte-model

Molecular dynamics simulation of a FAD-linked oxidocyclase

a6p6v9-model icon a6p6v9-model

Amber scripts to simulate a homology model of a berberine-bridge enzyme and its substrate

aa_stat icon aa_stat

AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.

abpoa icon abpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

abrowse icon abrowse

Multiple sequence alignment browser

achr icon achr

Simple acetylcholine receptor models

acpype icon acpype

OFFICIAL: AnteChamber PYthon Parser interfacE

aimg icon aimg

An image to ANSI color coded text converter

aldh1a1-data icon aldh1a1-data

Data acquisition workflow for aldehyde dehydrogenase substrates

allennlp icon allennlp

An open-source NLP research library, built on PyTorch.

alpine icon alpine

A rugged, minimal framework for composing JavaScript behavior in your markup.

apostl icon apostl

APOSTL is an interactive affinity proteomics analysis software developed to reformat affinity proteomics data (both spectral counting and MS1) for input into the SAINTexpress statistical package and to visualize the output(s).

asn icon asn

ASN / RPKI validity / BGP stats / IPv4v6 / Prefix / URL / ASPath / Organization / IP reputation and geolocation lookup tool / Traceroute server

autogluon icon autogluon

AutoGluon: AutoML for Text, Image, and Tabular Data

aw_nas icon aw_nas

aw_nas: A Modularized and Extensible NAS Framework

awsemmd icon awsemmd

Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code

ba-trees icon ba-trees

Born-again tree ensembles: Transforms a tree ensemble (e.g., a random forest) into a single decision tree of minimal size with the same decision function.

badread icon badread

a long read simulator that can imitate many types of read problems

balanced-assays icon balanced-assays

Find PubChem bioassays with a specific ratio of active/inactive compounds

bauer2017-pgsql icon bauer2017-pgsql

PL/pgSQL queries against the MIMIC-III v1.4 database used to recreate the dataset from Bauer et al. 2017.

bi-att-flow icon bi-att-flow

Bi-directional Attention Flow (BiDAF) network is a multi-stage hierarchical process that represents context at different levels of granularity and uses a bi-directional attention flow mechanism to achieve a query-aware context representation without early summarization.

bigrex icon bigrex

Express boilerplate with r-script utility

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