chebuu,github

opentrons_designer_beta_test

Opentrons protocol created with the Protocol Designer web app

ost_pymodules

A set of modules for advanced analysis of molecular structures and MD trajectories using the OpenStructure (http://www.openstructure.org) software.

pc-guided_protein_structure_refinement

Codes for doing PC-guided protein structure refinement

pconpy

a python module for generating protein contact maps and distance maps

pdnet

PDNET: A fully open-source framework for deep learning protein real-valued distances

physicell-jupyter-gui

Template Jupyter notebook for PhysiCell-powered nanoHUB apps

plastic-evolvability-avida

Explore the evolvability of plastic genotypes using the Avida digital evolution platform.

pmid-bib-xslt

Stylesheet used to extract BibTex citations from PubMed XML files

polydex

Sugar macrocycle assembled from SMILES strings

progre.sh

Progress bar (loading, process) to a shell script (bash, console, terminal).

proteotorch

Deep learning and ultrafast machine learning for peptide identification of shotgun proteomics data.

Minimal interface between Psi4 and OpenMM that allows passing of molecular systems between each program. Additionally, some helpful tools are included such as spherical addition of solvent (because adding solvent other than water doesn't work with addSolvent in OpenMM), calculation of bond lengths, angles, dihedrals, and unique conformation searching.

qbrc-neoantigen-pipeline

QBRC Neoantigen calling pipeline with CSiN calculation embedded

r-script

Pass data from NodeJS to R (and back again).

r-script-fridgerator

Module for running R scripts from node

radhar

Human Activity Recognition from Point Clouds Generated through a Millimeter-wave Radar

raptorx-3dmodeling

Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.