chenhui1016/gamlp

Code of GAMLP for Open Graph Benchmark

GIANT-XRT with GAMLP+RLU

This is the repository for reproducing the results in our paper: [Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Prediction] for the combination of GIANT-XRT with GAMLP+RLU.

Step 0: Install GIANT and get GIANT-XRT node features.

Please follow the instruction in [GIANT] to get the GIANT-XRT node features.

Step 1: Git clone this repo.

After following the steps in [GIANT], go to the folder pecos/examples/giant-xrt Then git clone this repo in the folder giant-xrt directly.

Step 2: Install additional packages.

If you install and run GIANT correctly, you should only need to additionally install dgl>=0.6.1. See here for pip/conda installation instruction for dgl. In our experiment, we use the following

# DGL's cudnn version need to be exactly the same as locally-installed CUDA version!
# for our p3dn.24xlarge, its cu11.0 now
pip install dgl-cu110 -f https://data.dgl.ai/wheels/repo.html

Step 3: Run the experiment.

Go to the folder giant-xrt.

To reproduce the GIANT-XRT results of GAMLP+RLU on OGB datasets, please run following commands.

For ogbn-papers100M:

GPU_ID=0
NODE_EMB_PATH=../proc_data_xrt/ogbn-papers100M/X.all.xrt-emb.npy
bash run_gamlp_xrt.sh ogbn-papers100M ${NODE_EMB_PATH} ${GPU_ID}

Results

If execute correctly, you should have the following performance for ogbn-papers100M (using our pretrained GIANT-XRT features).

GAMLP+RLU Number of params: 21,551,631

GAMLP+RLU	stage 0	stage 1	stage 2	stage 3
Average val accuracy (%)	72.61±0.04	72.89±0.02	72.99±0.03	73.05±0.04
Average test accuracy (%)	69.16±0.08	69.50±0.08	69.61±0.08	69.67±0.05

Remark: We follow default hyper-parameters of GAMLP+RLU for our GIANT-XRT. It is possible to achieve higher performance by fine-tune it more carefully.

For more details about GAMLP, please check their original README.

Citation

If you find our code useful, please consider citing both our paper and GAMLP work.

Our GIANT-XRT paper:

@article{chien2021node,
  title={Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Prediction},
  author={Eli Chien and Wei-Cheng Chang and Cho-Jui Hsieh and Hsiang-Fu Yu and Jiong Zhang and Olgica Milenkovic and Inderjit S Dhillon},
  journal={arXiv preprint arXiv:2111.00064},
  year={2021}
}

GAMLP paper:

@article{zhang2021graph,
  title={Graph Attention Multi-Layer Perceptron},
  author={Zhang, Wentao and Yin, Ziqi and Sheng, Zeang and Ouyang, Wen and Li, Xiaosen and Tao, Yangyu and Yang, Zhi and Cui, Bin},
  journal={arXiv preprint arXiv:2108.10097},
  year={2021}
}

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