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Hi 👋, I'm Dmitry Avtonomov

  • Original author of BatMass and FragPipe
  • Working in the field of mass spectrometry based :electron: 🔬 proteomics 🧬 🧫
  • ❤️ data visualisations.
  • My projects (with source code and publication links): https://dmtavt.com/project/

Dmitry Avtonomov's Projects

rtree icon rtree

Hyper-Dimensional R-Tree Index in Java

rtree-1 icon rtree-1

N-dimensional RTree implementation in C++

scoop icon scoop

A command-line installer for Windows.

shadow icon shadow

Gradle plugin to create fat/uber JARs, apply file transforms, and relocate packages for applications and libraries. Gradle version of Maven's Shade plugin.

sirius icon sirius

SIRIUS - metabolomics mass spectrometry framework for molecular formula identification of small molecules

smile icon smile

Statistical Machine Intelligence & Learning Engine

t-sne-java icon t-sne-java

Pure Java implementation of Van Der Maaten and Hinton's t-sne clustering algorithm

testing-woodstox-xml-parsing icon testing-woodstox-xml-parsing

Inspired by this question: https://codereview.stackexchange.com/questions/236428/make-my-xml-parser-in-java-using-woodstox-run-faster-and-use-less-memory-or-jus/236445?noredirect=1#comment463435_236445

thermorawinfo icon thermorawinfo

Getting some basic info about Thermo RAW files and MS2 scans

tosdatabridge icon tosdatabridge

A collection of resources for pulling real-time streaming data off of TDAmeritrade's ThinkOrSwim(TOS) platform; providing C, C++, Java and Python interfaces.

uplot icon uplot

📈 A small, fast chart for time series, lines, areas, ohlc & bars

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