chillaranand/consensus-cluster

consensus-cluster's Issues

Begin Clustering button never resets

What steps will reproduce the problem?
1. Hit the button, under any circumstances
2. Wait until it's "done"
3. profit??

The program currently has no concept of done-ness, which would allow the
button to be clicked again.

Caught exceptions should also reset the button, but don't.

Original issue reported on code.google.com by [email protected] on 10 Nov 2008 at 12:29

Energy Score Confusing

Will be removed in a future release.

This is output from the Simulated Annealing algorithm which reorders the
cluster trees.  It is irrelevant to anything useful.

Original issue reported on code.google.com by [email protected] on 11 Feb 2009 at 8:06

GTK+ File selection dialogue sometimes crashes in Win32

What steps will reproduce the problem?
1. File->Open or Define Clusters
2. ???
3. Crash

What is the expected output? What do you see instead?
Allow me to select something, instead of crashing.

Affects Win32 GUI users, but only occasionally at least in testing. If
anyone has a reproducible case, I would appreciate it.

Original issue reported on code.google.com by [email protected] on 28 Aug 2009 at 4:41

SOM speed enhancement

By memoising the distances between BMUs, SOM speed will increase by a
constant factor of N.

Original issue reported on code.google.com by [email protected] on 26 Feb 2009 at 12:40

Run data into folders please

What steps will reproduce the problem?
Any clustering

What is the expected output? What do you see instead?
I vaguely remember you saying that your program would put the output into 
a new folder.  Could you cause that to happen for each new run?  Right 
now, I close the program, move the files into a folder, then reopen the 
program to run data a different way.

What version of the product are you using? On what operating system?
ConsensusCluster-Win32-0.4.zip on Vista Enterprise.

Original issue reported on code.google.com by [email protected] on 26 Jun 2009 at 2:48

Exceptions require the user to restart the program

Such as pressing Begin while no input file is currently selected.

The issue here is an exception raised in one thread will cause the other to
hang.  Also, the program isn't designed to cluster twice...

Original issue reported on code.google.com by [email protected] on 9 Nov 2008 at 3:10

[deleted issue]

[deleted issue]

Cluster statistic

I've gotten asked a few times how we can be sure whether k=2 or k=3 is the 
better option, rather than just eyeballing it.  Gyan said that there was a 
statistic, but it is not apparent where this might be lurking.  Could you 
please add that location to the wiki?  Or if it's not present, could you please 
add it into the program?

Thank you.

Original issue reported on code.google.com by [email protected] on 30 Dec 2010 at 1:03

Define Clusters dialog box

What steps will reproduce the problem?
1. Select "Define Clusters" from menu
2. Click "Cancel"
3.

What is the expected output? What do you see instead?
File is selected. Acts like "Ok"

What version of the product are you using? On what operating system?
Windows

Please provide any additional information below.

Original issue reported on code.google.com by [email protected] on 28 Aug 2009 at 5:37

Kruskal test still missing in binary release

What steps will reproduce the problem?
1. Cluster using the Win32 binary

What is the expected output? What do you see instead?
Numbers in the ttest column, instead of blanks

Please use labels and text to provide additional information.

The kruskal ttest fails to run in the binary version, yet runs fine from
Win32 using the source version.

Original issue reported on code.google.com by [email protected] on 6 Aug 2009 at 12:00

Lack of Correlation Option

There needs to be a correlation distance metric.  Similarly, the button
needs to be enabled in the GUI, which requires the underlying support
structure to be written.

Original issue reported on code.google.com by [email protected] on 31 Oct 2008 at 1:51

No coring option in Windows

There is no box to click to try the experimental coring program.

What version of the product are you using? On what operating system?
Win32 v.06 on Windows Vista Enterprise

Original issue reported on code.google.com by [email protected] on 9 Oct 2009 at 6:29

GTK display inits from remote connection on recent pyGTK versions

What steps will reproduce the problem?
1. ssh into a server running ConsensusCluster
2. Run the program


What is the expected output? What do you see instead?
CC normally detects remote connections and runs from the command line
instead.  A recent version of pygtk has stopped the warnings CC was using
to detect this.  Might also be related to python 2.6 and the deprecation
warning removal code...

Original issue reported on code.google.com by [email protected] on 22 Jan 2009 at 6:01

SOM Cluster Fails

What steps will reproduce the problem?
Unknown as of yet, only one buggy dataset so far, needs investigation

Symptoms:
SOMCluster simply dies after a single subsample

Causes:
SOM Cluster fails to cluster datasets where the training nodes become
significantly distant from the data, ie, greater than the length of a double.

Original issue reported on code.google.com by [email protected] on 21 Jan 2009 at 3:02

Win32 0.4 Release on Hold

I generally use Enthought's amazing Python distribution and cx_freeze to
make binary releases.  Unfortunately, recent code changes have made python
2.6 a requirement, and Enthought has no plans to support 2.6, as far as I'm
aware.

So we're at an impasse until Enthought updates their dist or I take the
time to install every updated python package on my windows dev instance and
make an updated release.

Neither are just over the horizon, so to speak.

Original issue reported on code.google.com by [email protected] on 6 Apr 2009 at 4:01

Stop button

A stop button for GUI users would be excellent from a usability standpoint.

Original issue reported on code.google.com by [email protected] on 28 Aug 2009 at 4:39

No way to un-define clusters in GUI

What steps will reproduce the problem?
1. Define clusters

While we're at it, it would probably be a good idea to give the user some
indication of what defined clusters are currently selected.

Original issue reported on code.google.com by [email protected] on 18 Aug 2009 at 7:37

Not all files are closed during clustering

What steps will reproduce the problem?
1. Cluster
2. Cluster again
3. Try to relabel the previous folder

What is the expected output? What do you see instead?
You should be able to relabel the previous clustering folder

This only seems to affect Windows.

Original issue reported on code.google.com by [email protected] on 18 Aug 2009 at 7:41

Labels and colors

As an enhancement at some point, perhaps you could set up ConsensusCluster so 
that there is a way to not use Red and Green together in the PCA plots and the 
matrixes.  We had a color blind fellow in the lab briefly, and he kept having 
to interrupt one of us to ask how the plot looked.

Also, it would be nice to have the PC1/PC2 and PC2/PC3 axis labels back.  

Thank you!

Original issue reported on code.google.com by [email protected] on 29 Dec 2010 at 10:32

Needs real command line options

Right now command line options are virtually nonexistent.  Fixit.

Original issue reported on code.google.com by [email protected] on 26 Feb 2009 at 12:38