chungtseng Goto Github PK

hcpu_midterm

HumanCPU midterm

hmcpaper_scripts2

huffman

learning huffman coding

huffman_code

Python implementation of the Huffman Code compression algorithm.

huffman_datacompression

contains a pdf describing working of huffman data compression and codes in java script and python to implement it.

illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

juicebox

Visualization and analysis software for Hi-C data -

linkageanalysis

code

lncrna-screen

lncRNA-screen

manta

Structural variant and indel caller for mapped sequencing data

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

mlrefined

Jupyter notebooks, Python and MATLAB code examples, and demos from the textbook "Machine Learning Refined" (Cambridge University Press). See our blog https://jermwatt.github.io/mlrefined/index.html for interactive versions of many of the notebooks in this repo.

mssm

NORASeq: A tool for finding Non Obvious Relationships Among SEQuences

multiple-sequence-alignment

HW3 multiple sequence alignment and entropy calculation

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

pairwise-alignment-in-python

Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)

press

PRESS RNA-SEQ analysis from Blood Sample and Skin Biopsy

prody

A Python Package for Protein Dynamics Analysis

programmingforbiologists

pycogent

A mirror of PyCogent's SVN repo.

pyspark-and-aws-master-big-data-with-pyspark-and-aws

PySpark and AWS: Master Big Data with PySpark and AWS, by Packt Publishing

python-binary-search-tree

bst implementation in python, from derek banas java tutorial

python-data-science-essentials

Published by Packt Publishing

python-data-science-essentials-third-edition

Python Data Science Essentials - Third Edition, Published by Packt

python-graphs

DFS, BFS, Dijkstra's single source shortest path

python_utilities

A bunch of python scripts for genomics and proteomics analysis

qpipeline

An annotation and collection of utils for Next Gen Sequencing data

quicksort

Implement a quicksort algo in python (integers)

r-analysis-

Biostatistic exercise using R

rna-seq_standard