cjfields Goto Github PK

github-paper

Plos in Computational Biology paper related with github for researchers, code, source and document

h3abionet-sops

Standard operating procedures for H3ABionet data processing and analyses

hpcbio-refgraph_pipeline

issue-migration-test

test bioperl issue migration

khmer

in-memory k-mer counting

microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

ngi-rnaseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

obf-docs

Official documents of the Open Bioinformatics Foundation

p6-bio-htslib

Perl6 NativeCall bindings to htslib

p6-bio-samtools

Perl6 binding to samtools

p6-crypt-bcrypt

Bcrypt password hashing in Perl6

p6-file-temp

Simple implementation of File::Temp for creating temporary files

panda

Perl 6 module management solution, -Ofun

pbwa

Parallel bwa implementation

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

planets

readfq

Fast multi-line FASTA/Q reader in several programming languages

redmine-issues-to-github

Reads issues from a redmine API XML and adds them to a github repository.

redmine2github

Scripts to migrate redmine tickets to github issues

redmine_github_hook

Allow your Redmine installation to be notified when changes have been pushed to a Github repository.

sambamba

Tools for working with SAM/BAM data (development suspended until July)

samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

samtools

seqtk

sig-bio-shiny

A standalone R shiny application for doing significant biology on a set of genes

svg-graph

Visualize Graph.pm data in SVG

test-actions

Short-lived repo to test actions

wright