clessn/clessnverse

Collection of packages and functions for the CLESSN's projects

clessnverse's Issues

Document undocumented variables in functions

❯ checking Rd \usage sections ... WARNING
  Undocumented arguments in documentation object 'dbxDeleteFile'
    ‘filename’ ‘token’
  
  Undocumented arguments in documentation object 'dbxDownloadFile'
    ‘filename’ ‘local_path’ ‘token’
  
  Undocumented arguments in documentation object 'dbxListDir'
    ‘dir’ ‘token’
  
  Undocumented arguments in documentation object 'dbxMoveFile'
    ‘source’ ‘destination’ ‘token’ ‘overwrite’
  
  Undocumented arguments in documentation object 'dbxUploadFile'
    ‘filename’ ‘remote_path’ ‘token’ ‘overwrite’
  
  Functions with \usage entries need to have the appropriate \alias
  entries, and all their arguments documented.
  The \usage entries must correspond to syntactically valid R code.
  See chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.

Relative size of text in theme_clean_dark() not proportional

Solution to try

• ggplot2::rel() Relative sizing for theme elements

Define or reduce global variables

Issue

There are unspecified global variables.

❯ checking R code for possible problems ... NOTE
  dbxDeleteFile: no visible binding for global variable ‘logger’
  dbxDownloadFile: no visible binding for global variable ‘logger’
  dbxListDir: no visible binding for global variable ‘logger’
  dbxMoveFile: no visible binding for global variable ‘logger’
  dbxUploadFile: no visible binding for global variable ‘logger’
  detect_language: no visible binding for global variable ‘txt’
  detect_language: no visible binding for '<<-' assignment to ‘file_ftz’
  detect_language: no visible binding for global variable ‘file_ftz’
  translate_text: no visible binding for global variable ‘txt’
  Undefined global functions or variables:
    file_ftz logger txt

Proposed solution

utils::globalVariables()

Declare imports from ‘RCurl’ ‘XML’ ‘fastText’ ‘http’

Method

usethis::use_import_from()

Functions to check/add

RCurl

• RCurl::curlEscape
• RCurl::getURL

XML

• xmlTreeParse
• xmlRoot
• xmlValue

Other

• fastText::language_identification
• http::content

Add lifecycle badge to count_na()

Goal

Communicate to users the lifecycle of this function.

Method

Example:

clessnverse/R/domestication.R

Lines 33 to 38 in 588993b

	#' Reduce outliers with the interquartile range method
	#'
	#' @description
	#' `r lifecycle::badge("experimental")`
	#'
	#' Interquartile range method based off https://www.scribbr.com/statistics/outliers/

Put continuous variable between 0 and 1

Code and explanation from William Poirier:

Probablement plus facile de créer une fonction pour faire l’opération que tu veux faire. La fonction scale() est faite pour soustraire la moyenne de la colonne à toute les observations, et a en diviser l’écart-type

scaling_01 <- function(vector){
  min <- min(vector)
  max <- max(vector)
  output <- (vector-min)/(max-min)
  return(output)
}
sapply(data,scaling_01)

See documentation and tests in https://github.com/clessn/editwars/tree/11-standardise-edit-war-reverts-and-fatalities-variables

Check versions of packages required to run

Always a error message when downloading

Remove non-ASCII characters from `dev_t.R`

Issue

── R CMD check results ──────────────────────────────────────────────────────── clessnverse 0.4.0 ────
Duration: 46.4s

❯ checking R files for non-ASCII characters ... WARNING
  Found the following file with non-ASCII characters:
    dev_t.R
  Portable packages must use only ASCII characters in their R code,
  except perhaps in comments.
  Use \uxxxx escapes for other characters.

According to R Packages:

Checking R files for non-ASCII characters. 
For maximum portability (i.e. so people can use your package on Windows) you should avoid using non-ASCII 
characters in R files. It’s ok to use them in comments, but object names shouldn’t use them, 
and in strings you should use unicode escapes. See the CRAN-specific notes in ?sec-code for more details.

Proposed solution

• Replace non-ASCII characters with ASCII in comments
• #102
• #101

Create tests for get_dictionary()

Integrate function to shortcut `eval(parse(text="string"))`

eval(parse(text="string"))

evalparse("string")

Load namespace using roxygen2 tags

Namespace should not be edited by hand, only using tags from roxygen2.

Themes: margins aren't big enough around title and subtitle

theme_clean_light(): axis break lines are too pale

Check if element missing from vector

Function

Based on purrr::has_element()

misses_element <- function(.x, .y) {
    purrr::none(.x, identical, .y)
}

Examples

# Hubert's example
x <- c(3, 5, 7, 2, 4)

x |> misses_element(5)
# [1] FALSE

x |> misses_element(6)
# [1] TRUE

# Purrr::has_element examples
x <- list(1:10, 5, 9.9)

x |> misses_element(1:10)
# [1] FALSE

x |> misses_element(3)
# [1] TRUE

Add example/vignette for tone analysis

See code in elxn-qc2022

Add tags as experimental functions

• normalize_min_max()
• reduce_outliers()

Cleaner theme() arguments to theme_clean_light and theme_clean_dark

Add these lines of code (and remove former arguments) to the theme() function of the clessnverse themes.

theme(strip.background = element_blank(),
           axis.line = element_blank(),
           axis.ticks = element_blank())

Remove documented argument mot in usage in `commit_mart_row()`

Issue

❯ checking Rd \usage sections ... WARNING
  Undocumented arguments in documentation object 'commit_mart_row'
    ‘refresh_data’
  Documented arguments not in \usage in documentation object 'commit_mart_row':
    ‘mode’
  
  Undocumented arguments in documentation object 'dbxDeleteFile'
    ‘filename’ ‘token’
  
  Undocumented arguments in documentation object 'dbxDownloadFile'
    ‘filename’ ‘local_path’ ‘token’
  
  Undocumented arguments in documentation object 'dbxListDir'
    ‘dir’ ‘token’
  
  Undocumented arguments in documentation object 'dbxMoveFile'
    ‘source’ ‘destination’ ‘token’ ‘overwrite’
  
  Undocumented arguments in documentation object 'dbxUploadFile'
    ‘filename’ ‘remote_path’ ‘token’ ‘overwrite’
  
  Functions with \usage entries need to have the appropriate \alias
  entries, and all their arguments documented.
  The \usage entries must correspond to syntactically valid R code.
  See chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.

No file name in get_dictionary

Issue

To resolve https://github.com/clessn/elxn-qc2022/issues/16, I'm running the clessnverse::get_dictionary example:

clessnverse/R/dev_t.R

Lines 640 to 647 in 41beaf8

	#' # get credentials from hublot
	#' credentials <- hublot::get_credentials(
	#' Sys.getenv("HUB3_URL"),
	#' Sys.getenv("HUB3_USERNAME"),
	#' Sys.getenv("HUB3_PASSWORD")
	#' )
	#' # retrieve the COVID dictionary in both EN and FR
	#' clessnverse::get_dictionary("covid", c("en", "fr"), credentials)

I get the following error message:

> clessnverse::get_dictionary("covid", c("en", "fr"), credentials)
[1] "https://hublot.clessn.cloud/admin/api/v1/files/config_dict/"
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  'file' must be a character string or connection

Ran the source code for clessnverse::get_dictionary line by line, the error message pops up here:

clessnverse/R/dev_t.R

Line 655 in 41beaf8

config_dict <- utils::read.csv2(file_info$file)

Solutions tried

Credentials

• Verify credentials are set
• Verify credentials are valid by logging into Hublot on the web
• Update password for Hublot

Packages and code

• CRAN packages are up to date
• CLESSN GitHub packages are up to date
• Restart my R session
• Ask someone else to check it works

Create `reduce_outliers()` function

Using the interquartile range (IQR) method

See function shared by @hubcad25

Create function `count_missing_values()`

Issue

In a regression, when a independant variable has a missing value, that observation is removed.

It would be nice to be able to count the number of missing values per variable.

Proposed solution

Create function count_missing_values() which wraps around count_na() and count_null().

Function could be applied using mutate(accross(all_of(variables), count_missing_values).

Reorganise R/ folder

Issue

It is difficult to understand the content of the package because of empty files and because scale_discrete_quorum.R should be in the thematic file visualization.R.

Proposed solution

Delete empty .R files

• agoraplus
• civimetre
• radarplus

Other

• Move content of scale.R to visualization.R

Create documentation for split_words

Create sub-packages

Issue

Difficult to maintain all of the functions because of the variety.

Proposed solution

Create smaller packages that clessnverse would import à la tidyverse. Could divide by goal/user group.

Smaller package ideas:

• clessndev: would contain all dev_*.R

dev_t.R examples failed

Issue

When I run devtools::check(), I get the following error:

❯ checking examples ... ERROR
  Running examples in ‘clessnverse-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: commit_mart_row
  > ### Title: clessnverse::commit_mart_row
  > ### Aliases: commit_mart_row
  > 
  > ### ** Examples
  > 
  > 
  > # connect to hublot
  > credentials <- hublot::get_credentials(
  +   Sys.getenv("HUB3_URL"),
  +   Sys.getenv("HUB3_USERNAME"),
  +   Sys.getenv("HUB3_PASSWORD")
  +   )
  > 
  > 
  > clessnverse::commit_mart_row(
  +   table_name = "political_parties_press_releases_freq",
  +   key = "QS212022",
  +   row = list(week_num=21, count=6, political_party="QS"),
  +   mode = "refresh",
  +   credentials = credentials)
  No encoding supplied: defaulting to UTF-8.
  Error in hublot::handle_response(response, path, 200) : 
    error 403 (wrong credentials or action not allowed) at api/v1/clhub_tables_mart_political_parties_press_releases_freq/filter/ : <!DOCTYPE html>
  <html lang="en">
  <head>
  <meta http-equiv="content-type" content="text/html; charset=utf-8">
  <meta name="robots" content="NONE,NOARCHIVE">
  <title>403 Forbidden</title>
  <style type="text/css">
      html * { padding:0; margin:0; }
      body * { padding:10px 20px; }
      body * * { padding:0; }
      body { font:small sans-serif; background:#eee; color:#000; }
      body>div { border-bottom:1px solid #ddd; }
      h1 { font-weight:normal; margin-bottom:.4em; }
      h1 span { font-size:60%; color:#666; font-weight:normal; }
      #info { background:#f6f6f6; }
      #info ul { margin: 0.5em 4em; }
      #info p, #summary p { padding-top:10px; }
      #summary { background: #ffc; }
      #explanation { background:#eee; border-bottom: 0px none; }
    </style>
  </head>
  <body>
  <div id="summary">
    <h1>Forbidden <span>(403)</span>
  </h1>
    <p>CSRF verification failed. R
  Calls: <Anonymous> -> <Anonymous> -> <Anonymous> -> <Anonymous>
  Execution halted

Troubleshooting

• .Renviron is set up with my credentials.
• When running the example manually, I get a similar error message

Proposed solution

In source code R/dev_t.R, put examples in between don't run:

#'@examples
#'\dontrun{
#'geocode("3817 Spruce St, Philadelphia, PA 19104")
#'geocode("Philadelphia, PA")
#'dat <- data.frame(value=runif(3),address=c("3817 Spruce St, Philadelphia, PA 19104","Philadelphia, PA","Neverneverland"))
#'geocode(dat)
#'}

Update package version number

Issue

Package version number hasn't been updated regularly. Therefore, users can't currently update their package without having to put force = TRUE.

Proposed solution

Update package number so that when you run the code to download it, it automatically updates it.

Use format for version number MAJOR.MINOR.PATCH
https://semver.org

Rename default branch from master to main

Issue

Default branches used to be called master, but now they're called main. Previous default branches haven't been renamed, but having some repos named one or the other is inconvenient, hence why I'm standardizing it.

According to the documentation, By default, GitHub names the default branch *main* in any new repository.

Remove empty documentation tags in `dev_dropbox.R`

These warnings pop up when running devtools::document()

> document()
ℹ Updating clessnverse documentation
ℹ Loading clessnverse
There were 32 warnings (use warnings() to see them)
> warnings()
Warning messages:
1: [dev_dropbox.R:3] @description requires a value
2: [dev_dropbox.R:4] @param requires a value
3: [dev_dropbox.R:5] @param requires a value
4: [dev_dropbox.R:6] @param requires a value
5: [dev_dropbox.R:7] @return requires a value
6: [dev_dropbox.R:8] @examples requires a value
7: [dev_dropbox.R:59] @description requires a value
8: [dev_dropbox.R:60] @param requires a value
9: [dev_dropbox.R:61] @param requires a value
10: [dev_dropbox.R:62] @param requires a value
11: [dev_dropbox.R:63] @return requires a value
12: [dev_dropbox.R:64] @examples requires a value
13: [dev_dropbox.R:117] @description requires a value
14: [dev_dropbox.R:118] @param requires a value
15: [dev_dropbox.R:119] @param requires a value
16: [dev_dropbox.R:120] @param requires a value
17: [dev_dropbox.R:121] @return requires a value
18: [dev_dropbox.R:122] @examples requires a value
19: [dev_dropbox.R:153] @description requires a value
20: [dev_dropbox.R:154] @param requires a value
21: [dev_dropbox.R:155] @param requires a value
22: [dev_dropbox.R:156] @param requires a value
23: [dev_dropbox.R:157] @return requires a value
24: [dev_dropbox.R:158] @examples requires a value
25: [dev_dropbox.R:190] @description requires a value
26: [dev_dropbox.R:191] @param requires a value
27: [dev_dropbox.R:192] @param requires a value
28: [dev_dropbox.R:193] @param requires a value
29: [dev_dropbox.R:194] @return requires a value
30: [dev_dropbox.R:195] @examples requires a value
31: [dev_tools.R:15] @param requires a value
32: [dev_tools.R:16] @return requires a value

Fix argument documentation in normalize_min_max()

Undocumented arguments in documentation object 'normalize_min_max'
    ‘x’
  Documented arguments not in \usage in documentation object 'normalize_min_max':
    ‘vector’

clessnverse/R/domestication.R

Lines 23 to 28 in 5e17967

	normalize_min_max <- function(x, remove_na = T) {
	min <- min(x, na.rm = remove_na)
	max <- max(x, na.rm = remove_na)
	output <- (x - min )/(max - min)
	return(output)
	}

Document remove_na parameter in normalize_min_max()

Add functions to NAMESPACE using roxygen2 tags

Issue

There has been version conflicts in the namespace file reported by @p2xcode.

Proposed solution

To facilitate maintenance of the package, please add @export roxygen2 tags to functions that should be listed as exports in NAMESPACE.

Namespace should only be edited automatically by roxygen2 when running devtools::document(). Running devtools::document() will override any manual edits.

get_hub2_table(): Change class() to inherits() or is()

When devtools::check() is run, the following note appears about clessnverse::get_hub2_table()

❯ checking R code for possible problems ... NOTE
  Found if() conditions comparing class() to string:
  File ‘clessnverse/R/dev_t.R’: if (!is.null(data_filter) && !class(data_filter) == "list" || length(data_filter) == 0) ...
  Use inherits() (or maybe is()) instead.

The line in question is 216 in clessnverse/R/dev_t.R

Tidy `analysis.R`

Goal

Make it easier to read the package source code.

Method

Reduce redundant and obsolete information / content.

• Move function get_EuDistance() to #93
• Reduce redundant information

Add experimental lifecycle badges to functions

Issue

Users don't have a clear expectation of the state of the functions, but they still want convenient access to experimental functions.

Proposed solution

Add badges from the lifecycle package:

#' `r lifecycle::badge("experimental")`
#' `r lifecycle::badge("deprecated")`
#' `r lifecycle::badge("superseded")`

Eventually, could create defunct.R to store all defunct functions, like in dplyr

To do

• Add badges experimental to all functions (except sample_biased(), calculate_proportions() and run_dictionary() in analysis.R)

Set up basic automated tests

Issue

To facilitate continuous integration or development, there should be automated tests.

Proposed solution

Set up GitHub Actions to run R CMD check.

For a basic test, use:

usethis::use_github_actions()

Eventually, can set up tests for Linux, MacOs, Windows with

usethis::use_github_action_check_standard()

Split into smaller packages per theme

Issue

Package doesn't do one thing. There's a lot of dependencies #34. It's hard to maintain.

Proposed solution

• split into smaller packages per theme/user group
• add said packages as suggests or imports
• change package version to 1.0.0

Packages

• clessnvis: contains all visualisation scripts
• clessndev: contain all dev_*.R

Tidy description file

usethis::use_tidy_description()

Create function `get_EuDistance()`

Issue

The code for get_EuDistance() is commented out here:

clessnverse/R/analysis.R

Lines 4 to 29 in 4d5c231

	#### ~1.1 Eucledian distance ####
	#get_EuDistance <- function(point1,point2){
	# if (length(point1) > 3 | length(point2) > 3) {
	# stop("Points must come from a 2D or 3D space. \n Point 1 has ",length(point1),
	# " dimensions and point 2 has ",length(point2)," dimensions.")
	# }
	# else if (length(point1) != length(point2)) {
	# stop("Points must have the same number of dimensions. \n Point 1 has ",
	# length(point1),
	# " dimensions and point 2 has ",length(point2)," dimensions.")
	# }
	# else if (length(point1) == 0) {
	# stop("Point 1 has length 0.")
	# }
	# else if (length(point2) == 0) {
	# stop("Point 2 has length 0.")
	# }
	# else if (length(point1) == 3) {
	# euDistance <- sqrt((point2[1]-point1[1])^2 + (point2[2]-point1[2])^2 +
	# (point2[3]-point1[3])^2)
	# }
	# else if (length(point1) == 2) {
	# euDistance <- sqrt((point2[1]-point1[1])^2 + (point2[2]-point1[2])^2)
	# }
	# return(euDistance)
	#}

It is not part of the package. It's unclear why it is included like this.

Similar functions seem to exist already, therefore this function might not be needed.

Proposed solution

• Move the code from the package to this issue
• Add function to the package as needed

get_hub2_table(): Running examples in 'clessnverse-Ex.R' failed

When I run devtools::check(), I get the following error:

── R CMD check results ───────── clessnverse 0.0.0.9122 ────
Duration: 1m 18.7s

❯ checking examples ... ERROR
  Running examples in 'clessnverse-Ex.R' failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: get_hub2_table
  > ### Title: clessnverse::get_hub2_table
  > ### Aliases: get_hub2_table
  > 
  > ### ** Examples
  > 
  > 
  >  clessnhub::login(
  +    Sys.getenv("HUB_USERNAME"),
  +    Sys.getenv("HUB_PASSWORD"),
  +    Sys.getenv("HUB_URL"))
  connexion à  en cours...
  Error in curl::curl_fetch_memory(url, handle = handle) : 
    Protocol "" not supported or disabled in libcurl
  Calls: <Anonymous> ... request_fetch -> request_fetch.write_memory -> <Anonymous>
  Execution halted

❯ checking package dependencies ... NOTE
  Imports includes 21 non-default packages.
  Importing from so many packages makes the package vulnerable to any of
  them becoming unavailable.  Move as many as possible to Suggests and
  use conditionally.

❯ checking R code for possible problems ... NOTE
  Found if() conditions comparing class() to string:
  File 'clessnverse/R/dev_t.R': if (!is.null(data_filter) && !class(data_filter) == "list" || length(data_filter) == 0) ...
  Use inherits() (or maybe is()) instead.

1 error ✖ | 0 warnings ✔ | 2 notes ✖

Integrate function to return the number of NA in a vector

sum(is.na(vector))

Can be applied in a sapply for multiple columns

Error in applying code to ggplot

Message d'erreur

Error in get(method, envir = home) : 
  lazy-load database '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/gtable/R/gtable.rdb' is corrupt
In addition: Warning messages:
1: In heightDetails(ggrobs[[i]]) :
  restarting interrupted promise evaluation
2: In get(method, envir = home) :
  restarting interrupted promise evaluation
3: In get(method, envir = home) : internal error -3 in R_decompress1

Unable to download clessnverse without clessnhub and hublot prerequisites

Issue description

When downloading clessnverse, I got the following error messages and it stopped downloading.

> devtools::install_github("clessn/clessnverse")
Downloading GitHub repo clessn/clessnverse@HEAD
Skipping 2 packages not available: hublot, clessnhub
Installing 21 packages: SnowballC, ISOcodes, iterators, XML, tokenizers, janeaustenr, hunspell, getopt, RcppArmadillo, stopwords, RcppParallel, fastmatch, foreach, rlist, tidytext, tidyjson, optparse, hublot, clessnhub, tictoc, quanteda

# [skipping to the error messages]

ERROR: dependencies ‘clessnhub’, ‘hublot’ are not available for package ‘clessnverse’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/clessnverse’
Warning messages:
1: packages ‘hublot’, ‘clessnhub’ are not available for this version of R

Versions of these packages for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 
2: In i.p(...) :
  installation of package ‘RcppArmadillo’ had non-zero exit status
3: In i.p(...) :
  installation of package ‘/var/folders/f4/dg30smyn5jx_5ffqrtz0zn2m0000gn/T//RtmpoNQnus/filec5b9febff8/clessnverse_0.0.0.9200.tar.gz’ had non-zero exit status

I solved this by downloading clessnhub and hublot before retrying to download clessnverse.

devtools::install_github("clessn/clessn-hub-r")
devtools::install_github("clessn/hublotr")

It worked after that.

Solution proposal

• In the README, add prerequisite code for clessnhub and hublot

Please remove threats from the readme <3

Remove white border around theme_clean_dark()

Use public dictionary in get_dictionary example

Issue

Users with no credentials for Hublot cannot try the example in clessnverse::get_dictionary because covid is a private dictionary, according to the Hublot website.

Proposed solution

Replace the private covid dictionary example with a public one like stopwords:

# get credentials from hublot
 credentials <- hublot::get_credentials(
   Sys.getenv("HUB3_URL"),
   Sys.getenv("HUB3_USERNAME"),
   Sys.getenv("HUB3_PASSWORD")
   )

# retrieve the COVID dictionary in both EN and FR
clessnverse::get_dictionary("stopwords", c("en", "fr"), credentials)

Before implementing, should validate the proposed code and resolve #47

Originally posted by @judith-bourque in #47 (comment)

Move error message "credentials invalid" to hublot package

Problem

I'm currently looking at tests to run on get_dictionary() #41. Error messages should be within the original package/function, not a dependant function.

Proposed solution

The following lines or error message should be in hublot, not in clessnverse.

clessnverse/R/dev_t.R

Lines 633 to 635 in f56dd8f

	if (is.null(credentials$auth) || is.na(credentials$auth)) {
	stop("hublot credentials in clessnverse::get_dictionary are invalid")
	}

Move some imported packages to suggests

When devtools::check() is run, the following note appears

checking package dependencies ... NOTE
  Imports includes 22 non-default packages.
  Importing from so many packages makes the package vulnerable to any of
  them becoming unavailable.  Move as many as possible to Suggests and
  use conditionally.

Fix warnings and notes when running `devtools::check()`

Warnings

• #66
• #67
• #87
• #63

❯ checking R files for non-ASCII characters ... WARNING
  Found the following file with non-ASCII characters:
    dev_t.R
  Portable packages must use only ASCII characters in their R code,
  except perhaps in comments.
  Use \uxxxx escapes for other characters.

❯ checking dependencies in R code ... WARNING
  '::' or ':::' imports not declared from:
    ‘RCurl’ ‘XML’ ‘fastText’ ‘http’

❯ checking Rd \usage sections ... WARNING
  Undocumented arguments in documentation object 'commit_mart_row'
    ‘refresh_data’
  Documented arguments not in \usage in documentation object 'commit_mart_row':
    ‘mode’
  
  Undocumented arguments in documentation object 'dbxDeleteFile'
    ‘filename’ ‘token’
  
  Undocumented arguments in documentation object 'dbxDownloadFile'
    ‘filename’ ‘local_path’ ‘token’
  
  Undocumented arguments in documentation object 'dbxListDir'
    ‘dir’ ‘token’
  
  Undocumented arguments in documentation object 'dbxMoveFile'
    ‘source’ ‘destination’ ‘token’ ‘overwrite’
  
  Undocumented arguments in documentation object 'dbxUploadFile'
    ‘filename’ ‘remote_path’ ‘token’ ‘overwrite’
  
  Undocumented arguments in documentation object 'normalize_min_max'
    ‘x’
  Documented arguments not in \usage in documentation object 'normalize_min_max':
    ‘vector’
  
  Functions with \usage entries need to have the appropriate \alias
  entries, and all their arguments documented.
  The \usage entries must correspond to syntactically valid R code.
  See chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.

Notes

• #34
• #86
• #35

❯ checking package dependencies ... NOTE
  Imports includes 23 non-default packages.
  Importing from so many packages makes the package vulnerable to any of
  them becoming unavailable.  Move as many as possible to Suggests and
  use conditionally.

❯ checking R code for possible problems ... NOTE
  dbxDeleteFile: no visible binding for global variable ‘logger’
  dbxDownloadFile: no visible binding for global variable ‘logger’
  dbxListDir: no visible binding for global variable ‘logger’
  dbxMoveFile: no visible binding for global variable ‘logger’
  dbxUploadFile: no visible binding for global variable ‘logger’
  detect_language: no visible binding for global variable ‘txt’
  detect_language: no visible binding for '<<-' assignment to ‘file_ftz’
  detect_language: no visible binding for global variable ‘file_ftz’
  translate_text: no visible binding for global variable ‘txt’
  Undefined global functions or variables:
    file_ftz logger txt
  
  Found if() conditions comparing class() to string:
  File ‘clessnverse/R/dev_t.R’: if (!is.null(data_filter) && !class(data_filter) == "list" || length(data_filter) == 0) ...
  Use inherits() (or maybe is()) instead.

0 errors ✔ | 3 warnings ✖ | 2 notes ✖

Automatically download hublot and clessnhub packages dependencies

Issue

When users download the package for the first time, it throws an error message that it can't download hublotr and clessn-hub-r from CRAN.

Proposed solution

Follow instructions in this vignette by adding the packages in the description to Remotes:

Remotes: clessn/hublotr,
    clessn/clessn-hub-r

Add repository description

Suggested description:

"Package for data domestication, analysis and visualization"

Adrien: je devine que t'as l'autorisation pour le faire?