Related Issues (20)
- sambamba depth CANCELLED DUE TO TIME LIMIT HOT 1
- vcf2cytosure version bump 0.8 HOT 2
- File name vcf2cytosure, cancer HOT 3
- Customer request to modify the --distance param in VEP from 5Kb to 500Kb HOT 7
- LOH in Scout from balsamic data (Myeloid panel)
- Update GitHub action image. Ubuntu 18.04 will be unsupported by 4/1/2023
- SAM validation error in mergeBam rule HOT 3
- bcftools in varcall_py3 container fails HOT 1
- Fixing `balsamic init` and references downloads by adding `SLURM` configuration and fixing `singularity` commands HOT 1
- GenMod family missing for ranked files
- UBTF-TD calling needs to be implemented
- MRD
- BALSAMIC v12.0.0 release
- create artificial truth-set for validation and variant-calling optimisation HOT 2
- Optimise mergeBam rule HOT 5
- Check reference links availability via Github Actions HOT 3
- Optimise build of cache
- Report gender to Genotype
- Move concatenation from cg to BALSAMIC
- ascatNGS - Tumour Normal cases failing - cannot create R_tmpdir HOT 1
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