ascatNGS - Tumour Normal cases failing - cannot create R_tmpdir

[karlnyr]

ascatNGS - Tumour Normal cases failing - cannot create R_tmpdir

[khurrammaqbool]

The error does not seem to be specific to R. The relevant portion of the error log is below:

THREAD_EXITED: General output can be found in this file, last 10 lines below: /home/proj/production/cancer/cases/wiredpig/analysis/tmp/de98ctjk/tmpAscat/logs/Sanger_CGP_Ascat_Implement_ascat.0.out

THREAD_EXITED: Errors can be found in this file, output below: {CASE_FOLER}/analysis/tmp/de98ctjk/tmpAscat/logs/Sanger_CGP_Ascat_Implement_ascat.0.err


THREAD_EXITED: Wrapper script message:
"{CASE_FOLER}/analysis/tmp/de98ctjk/tmpAscat/logs/Sanger_CGP_Ascat_Implement_ascat.0.sh 1>  {CASE_FOLER}/analysis/tmp/de98ctjk/tmpAscat/logs/Sanger_CGP_Ascat_Implement_ascat.0.out 2>  {CASE_FOLER}/analysis/tmp/de98ctjk/tmpAscat/logs/Sanger_CGP_Ascat_Implement_ascat.0.err" unexpectedly returned exit value 2 at /opt/wtsi-cgp/lib/perl5/PCAP/Threaded.pm line 244.
 at /opt/wtsi-cgp/lib/perl5/PCAP/Threaded.pm line 235

This requires further investigation and testing.

[ivadym]

It seems that it has not been reported recently, closing! Feel free to reopen if we encounter these issues again.