cmuschwartzlab/tusv-ext

tusv-ext's Issues

No module named solver

Good afternoon:
I am trying to get this software to work for me using downloaded testing dataset from your site but failed so far. First of all, I could access Gurobi license and using module load Gurobi into my working environment. Also I used conda to access python (version 2.7). Here are some of the code I used:

conda create --name tusv python=2.7 bioconda::ete2 graphviz biopython sympy
conda activate tusv;
pip install graphviz
python -V
python /data/wangyong/Tusv_ext/tusv-ext.py -i /data/wangyong/Tusv_ext/testing/vcf -o /data/wangyong/Tusv_ext/testing/result/ -n 5 -c 50 -t 10 -r 10 -col 1 -leaf 1 -sv_ub 5 -const 50;
conda deactivate;

The error I got after I ran the above code is:
Traceback (most recent call last):
File "/data/wangyong/Tusv_ext/tusv-ext.py", line 23, in
import solver as sv
ImportError: No module named solver

Could you please give me some suggestions to take care of this error? Thanks.
By the way, another question I have is about the genome I can apply this software to. Specifically, whether I can use this software on species like mouse, dog et al other than human?
Thanks for your help.
YH