Short scripts and notebooks written mostly in Python and R to analyze Gencode - CLS masterTable
- anchorTranscriptsEnds.pl (https://github.com/julienlag/anchorTranscriptsEnds)
- gffToHash.pm
- hashToGff.pm
- bed12togff (https://github.com/julienlag/utils)
- buildLoci.pl (https://github.com/julienlag/utils)
- extract.gtf.tags.sh ()
- extractTranscriptEndsFromBed12.pl (https://github.com/julienlag/utils)
- gff2bed_full.pl (https://github.com/julienlag/utils)
- join.py ()
- sortbed (https://github.com/julienlag/utils)
- tmerge (https://github.com/julienlag/utils)