coffm049-2/lakeontario

Notes for the Lake Ontario model

LakeErie.md

Notes and scripts for Lake Erie TP model.

Contents

• Restarts: How to create a restart file to set the initial conditions(ICs) to match LEEM ICs.
• run - notes for compiling and running on Expanse at SDSC
• submit.sh - SLURM batch script for Expanse

data

• TP_ZOO_Loads.csv: Phosphorus loading, including Zooplankton component

scripts

• add-tp-river-loads.R: R script to add TP loads to river forcing file
• ncks_clip_forcing.sh: Clip forcing files in order to run FVCOM as 'restart' from March 1

Other Links:

• visit-tp-compare - create images and movies from TP model or TP-(as function of LEEM) model
• shiny-le - Code for R Shiny app
• visit-scripts - general visit scripts, including a script to make images and movies of every LEEM variable
• BIO_TP - the TP bio model for FVCOM
• shiny-le/README.md: Readme has notes to create netCDF with TP derived from LEEM quantities

Other Notes:

• For VisIt, comparing with LEEM:

DefineScalarExpression("TP_tot", "RPOP + LPOP + RDOP + LDOP + PO4T + LPIP + RPIP + (ZOO1 + ZOO2 + ZOO3)/50.0")