Name: Computational Omics and Systems Biology Group
Type: Organization
Bio: The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.
Twitter: CompOmics
Blog: https://www.compomics.com/
Computational Omics and Systems Biology Group's Projects
Uniform annotation of identified spectra.
Data conversion tool for creating PRIDE XML
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
Pipeline to bring peptdie quantification in Pride using moFF
Protein quantification based on reporter ions
Online public viewer for ReSpin Results
Sequence conservation of protein on 3D structure.
An implementation of the Search All, Asses Subset strategy for FDR estimation in shotgun proteomics.
Highly adaptable common interface for proteomics search and de novo engines
A rich client tool used for browsing through spectra looking for specific mass differences.
Scoring functions to compare MS/MS spectra
Parser and viewer for thermo msf files.
Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
Graphical user interface for the ThermoRawFileParser
The Online Protein Processing Resource.
visualisation tool for proteins
Workshop: Tackling peptide identification ambiguity with machine learning
An algorithm to identify cross-linked peptides
Java-based parser for X!Tandem output xml files