compomics Goto Github PK

pride-asa-pipeline

Uniform annotation of identified spectra.

pride-converter

Data conversion tool for creating PRIDE XML

proteinassociationpair

psi_io

psm_utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

quantpridepep

Pipeline to bring peptdie quantification in Pride using moFF

reporter

Protein quantification based on reporter ions

respinonline

Online public viewer for ReSpin Results

scop3d

Sequence conservation of protein on 3D structure.

search-all-assess-subset

An implementation of the Search All, Asses Subset strategy for FDR estimation in shotgun proteomics.

search-all-assess-subset-paper

searchgui

Highly adaptable common interface for proteomics search and de novo engines

secrete-site

spectrawl

A rich client tool used for browsing through spectra looking for specific mass differences.

spectrum_similarity

Scoring functions to compare MS/MS spectra

tabloidproteome

thermo-msf-parser

Parser and viewer for thermo msf files.

thermorawfileparser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

thermorawfileparsergui

Graphical user interface for the ThermoRawFileParser

tissue_prediction_manuscript

toppr

The Online Protein Processing Resource.

visualisationtool

visualisation tool for proteins

workshop-biosciencesnapshot

workshop-ml-proteomics

Workshop: Tackling peptide identification ambiguity with machine learning

xilmass

An algorithm to identify cross-linked peptides

xltools

xtandem-parser

Java-based parser for X!Tandem output xml files