Comments (8)
Hi Maciej,
Thanks for the suggestion. Let's me check with JC or JL. Perhaps they can implement this easily, and it will be useful for us as well.
Thanks
E.
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Dear @EduEyras , is there any update on the case?
Best,
Maciek
from suppa.
from suppa.
I've taken the liberty of making a package for this in bioconda, so one can now conda install -c bioconda suppa
. For your next release, it would be nice if you incorporated the patch that I had to make for this package. It would also be nice to generally reorganize things, since a module named lib
is likely to be ambiguous (try calling it suppa
or something like that).
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from suppa.
Dear Devon,
I was gonna incorporate the shebang lines. Since we already have some improvements that we want to put on a new release, how can we update the bioconda repository for pointing to this new one?
Thanks a lot for your time
from suppa.
The general procedure is:
- Make a release of SUPPA
- Fork the
bioconda/bioconda-recipes
repository and make a new branch. - Update
meta.yaml
underrecipes/suppa
to point to the new version. Removepatches
as well. - Update
build.sh
underrecipes/suppa
if needed. - Make a pull request.
Then you can be added to the bioconda team so you can just create a branch on it and merge things yourself in the future.
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Perfect. Thanks for the explanation!!
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Related Issues (20)
- simplify event ids for cross referencing in genome browser HOT 3
- hg38 HOT 5
- ERROR: suppa.py diffSplice PermissionError HOT 2
- When calculating the cluster, the following prompt appears, and only a 2kb result file is generated. Is this a data problem? Still reporting an error? HOT 2
- Covariates in diffSplice (multi-factor design) HOT 2
- diffSplice Classic doesn't consider dPSI cutoff HOT 1
- error with diffSplice HOT 10
- diffSplice --lower-bound doesn't work ! HOT 4
- ERROR:psiCalculator:No expression values have been buffered. HOT 3
- Problems replicating TRA2 tutorial results HOT 3
- DiffSplice significant results have dpsi values of 0 HOT 5
- Encountering errors when trying to process large numbers of samples with SUPPA2 DiffSplice HOT 1
- Definition of Positive and Negative is inconsistent with Fig 3 for 'Right' Alternative Terminal Exon Events
- A problem occur in step 'psiPerEvent' HOT 13
- Wondering will SUPPA generate different results while using the same file? HOT 1
- ERROR:lib.tools:['Unexpected number of fields. 3 expected, 2 given'] HOT 3
- Why this regions were not regarded as RI ? HOT 2
- Something went wrong with detection of A5 and A3 HOT 6
- Regarding pvalues in diffSplice HOT 1
- generateEvents missies some Retained Intron (RI) events HOT 5
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