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Anaconda package with SUPPA? about suppa HOT 8 CLOSED

comprna avatar comprna commented on August 13, 2024 3
Anaconda package with SUPPA?

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Comments (8)

EduEyras avatar EduEyras commented on August 13, 2024

Hi Maciej,

Thanks for the suggestion. Let's me check with JC or JL. Perhaps they can implement this easily, and it will be useful for us as well.

Thanks

E.

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AngryMaciek avatar AngryMaciek commented on August 13, 2024

Dear @EduEyras , is there any update on the case?

Best,
Maciek

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EduEyras avatar EduEyras commented on August 13, 2024

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dpryan79 avatar dpryan79 commented on August 13, 2024

I've taken the liberty of making a package for this in bioconda, so one can now conda install -c bioconda suppa. For your next release, it would be nice if you incorporated the patch that I had to make for this package. It would also be nice to generally reorganize things, since a module named lib is likely to be ambiguous (try calling it suppa or something like that).

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EduEyras avatar EduEyras commented on August 13, 2024

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JLTrincado avatar JLTrincado commented on August 13, 2024

Dear Devon,

I was gonna incorporate the shebang lines. Since we already have some improvements that we want to put on a new release, how can we update the bioconda repository for pointing to this new one?

Thanks a lot for your time

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dpryan79 avatar dpryan79 commented on August 13, 2024

The general procedure is:

  1. Make a release of SUPPA
  2. Fork the bioconda/bioconda-recipes repository and make a new branch.
  3. Update meta.yaml under recipes/suppa to point to the new version. Remove patches as well.
  4. Update build.sh under recipes/suppa if needed.
  5. Make a pull request.

Then you can be added to the bioconda team so you can just create a branch on it and merge things yourself in the future.

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JLTrincado avatar JLTrincado commented on August 13, 2024

Perfect. Thanks for the explanation!!

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