Benchmarking SUPPA & rMATS,about comprna/suppa

Comments (11)

EduEyras commented on August 13, 2024

Hi Jamal, what we did was to convert the rMATS coordinates to SUPPA ids so that you can compare directly the two list of events. You can get that script from the SUPPA repository https://github.com/comprna/SUPPA/blob/master/rmats_to_suppa_ids_SE_events.pl I hope this helps E.

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On Mon, 14 Jan 2019 at 13:21, JamalELH ***@***.***> wrote: Dear Eduardo, Thank you so much for this extremely useful program, SUPPA2. I have been running your program on my RNA-seq dataset (2 conditions in triplicates) for the analysis of alternative splicing changes. By curiosity I wanted to compare the outputs from SUPPA2 and rMATS "at least for (significant) skipped-exons events that are identically defined by SUPPA & rMATS". To do so I think I need to do some per-processing of the output from each algorithm to get a common "data structure", because as you know the outputs are not similar. I was planning to make like a coverage plot of exonic regions that are spliced to see whether they are consistent between the two algorithms or not! Is there an easy and more efficient way to do this? Thank you so much in advance for your help! Respectfully, Jamal. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#47>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMWVB4cKr0YVlrqxVtEc1oUy5CKFYOT4ks5vDHZEgaJpZM4Z-JMR> .

-- Dr E Eyras ICREA Research Professor PRBB, Dr Aiguader 88 Tel: +34 93 316 0502 (ext 1502) E08003 Barcelona - Spain Fax: +34 93 316 0550 http://scholar.google.com/citations?user=LiojlGoAAAAJ http://www.researcherid.com/rid/L-1053-2014

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JamalELH commented on August 13, 2024

Dear Eduardo,
Thank you so much for your quick and prompt reply!

What about A5' and A'3SS events that are also identically defined by rMATS and SUPPA?
Another related question regarding this benchmark, is it still "correct" to do so as rMATS is run directly on the alignment bam files "from STAR/Tophat" while SUPPA2 takes as inputs the expression at isoform level obtain from those bam files e.i they are not run on the same exact input??

Just for your information, I also run SUPPA2 after using Salmon vs RSEM vs Kallisto for the quantification at isoform level. I ve done this to see whether SUPPA2 depends on the quantification tool used. From the results I can say yes, which is normal as each of the three quantification tools has its own "method" to attribute reads to their corresponding isoforms, which may consequently influence the dispersion between replicates.

Bests regards,
Jamal.

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EduEyras commented on August 13, 2024

Hi Jamal,

What about A5' and A'3SS events that are also identically defined by rMATS and SUPPA?

yes, you're right. I've uploaded the scripts to convert A5 and A3 events as well.

Another related question regarding this benchmark, is it still "correct" to do so as rMATS is run directly on the alignment bam files "from STAR/Tophat" while SUPPA2 takes as inputs the expression at isoform level obtain from those bam files e.i they are not run on the same exact input??

I think the comparison makes sense, exactly because the approaches are so different. If you compare tools that work similarly the results will be closer and perhaps won't tell you anything new. Comparing rMATS with SUPPA2 we learned a lot about the weakness and strengths of each method, and we recovered interesting events that would be missed by one or the other. In fact, one of our conclusions is that perhaps one needs to run two or more methods to have a complete picture of the splicing variation.

I would be interested in this comparison. In our hands we did not see much differences between using Salmon or Kallisto. We have used RSEM data as well, but we did not compare it with Salmon or Kallisto. RSEM appears to have the best accuracy in various benchmarks. I hope this helps Best Eduardo Bests regards,

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JamalELH commented on August 13, 2024

Thank you so much for your comments!
I will keep you updated about the comparison of Salmon with Kallisto and rMATS.
In case I would like to share some results with you, where can I send it in private?

Best regards,
Jamal.

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EduEyras commented on August 13, 2024

Hi Jamal, you can contact me at eduardo [dot] eyras [at] gmail [dot] com cheers E.

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On Mon, 14 Jan 2019 at 14:34, JamalELH ***@***.***> wrote: Thank you so much for your comments! I will keep you updated about the comparison of Salmon with Kallisto and rMATS. In case I would like to share some results with you, where can I send it in private? Best regards, Jamal. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#47 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMWVB-LITkO9igySHon586uy4WFvWDirks5vDIdWgaJpZM4Z-JMR> .

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JamalELH commented on August 13, 2024

Dear Eduardo,
As a follow-up on our last discussion 'comparing SUPPA vs rMaATS outputs', the scenarios I found are the following:
SE events : rMATS detected 89999 while SUPPA detected 39090 event. Overlapping them, regardless of whether they were significant or not I found 52110 event (24.1%) detected by both, 13980 (13.4%) exclusively detected by SUPPA and 64889 (62.4%).
Significant SE events: 526 SE events were significant according to rMATS, 174 SE events according to SUPPA, only 20 (3%) were significant according to both.

I also overlapped A3/5SS and the results are quit similar to above.
Is this results seems OK according to your expertise with the above-mentioned pipelines?
Thank you so much in advance!
Please note that I used the same genome annotation files both SUPPA and rMATS pipeline (gencode.v27).
command lines:
SUPPA:
python $SUPPA diffSplice -m empirical -gc -s -me -th 1 -i $SUPPA_outputs/all_local_events.ioe -p $SUPPA_outputs/siRNA/siRNA_ERa.psi $SUPPA_outputs/siRNA/siRNA_CTRL.psi -e $SUPPA_outputs/siRNA/siRNA_ERa.tpm $SUPPA_outputs/siRNA/siRNA_CTRL.tpm -o $SUPPA_outputs/siRNA/siRNA_diffSplice.

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EduEyras commented on August 13, 2024

Hi Jamal, thanks for the email. Yes, that sounds like normal, unfortunately. deltaPSI values tend to agree on the direction, but the number of significant cases do not overlap so much. These differences may come from the differences between mapping to the genome or quantifyng transcripts directly, which are exacerbated with lower seq depth. How deep are your samples? Also, did you use a cut-off for the deltaPSI with rMATS? Or you took simply all of those with significant p-value? Thanks for the info cheers E.

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On Tue, 29 Jan 2019 at 15:08, JamalELH ***@***.***> wrote: Dear Eduardo, As a follow-up on our last discussion 'comparing SUPPA vs rMaATS outputs', the scenarios I found are the following: SE events : rMATS detected 89999 while SUPPA detected 39090 event. Overlapping them, regardless of whether they were significant or not I found 52110 event (24.1%) detected by both, 13980 (13.4%) exclusively detected by SUPPA and 64889 (62.4%). Significant SE events: 526 SE events were significant according to rMATS, 174 SE events according to SUPPA, only 20 (3%) were significant according to both. I also overlapped A3/5SS and the results are quit similar to above. Is this results seems OK according to your expertise with the above-mentioned pipelines? Thank you so much in advance! Please note that I used the same genome annotation files both SUPPA and rMATS pipeline (gencode.v27). command lines: SUPPA: python $SUPPA diffSplice -m empirical -gc -s -me -th 1 -i $SUPPA_outputs/all_local_events.ioe -p $SUPPA_outputs/siRNA/siRNA_ERa.psi $SUPPA_outputs/siRNA/siRNA_CTRL.psi -e $SUPPA_outputs/siRNA/siRNA_ERa.tpm $SUPPA_outputs/siRNA/siRNA_CTRL.tpm -o $SUPPA_outputs/siRNA/siRNA_diffSplice. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#47 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMWVB5iBs6heOLKFsplSaTnJVFgDFbkoks5vIFXQgaJpZM4Z-JMR> .

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JamalELH commented on August 13, 2024

Dear Eduardo,
Thank you for your quick reply!
My two case studies datasets are 80M and 30M respectively (each is 2 conditions in triplicates).
I wanted to be more exhaustive with rMATS so I did not use a cutoff but considered all those with a significant (FDR).

When I also used SUPPA but changed the quantifier upstream of it (salmon, rsem, kallisto), I found 100% overlap between the three when considering the events coordinates. But they differ in significance. Please refer to the attached venndiagram for more details about this point.

As I would like also to overlap with MAJIQ, which is able to detect more complex, non-binary local splicing events + de novo junctions/exons, is there a way to make a common data structure for the outputs from SUPPA and MAJIQ. Should I also consider the p-value column in SUPPA output as significance to perfom an experimental validation? because I knew that this p-value is for within genes events, not for between genes?

Thanks a lot for your help!

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EduEyras commented on August 13, 2024

Hi Jamal, Thanks for the analyses. The comparison with MAJIQ is a bit trickier. We used the junctions from MAJIQ rather than the LSVs and from the junctions compatible with the inclusion of an exon, we selected the one with the largest posterior from MAJIQ. There can be multiple compatible junctions and sometimes the same junction appears in more than one LSV. I found no other easy way to compare them. The LSVs are not easy to compare directly. You can use the p-value to select significant cases in SUPPA. The "within gene" refers to the correction for multiple testing, but it is still meaningful for ranking the events. Using this in combination with the |deltaPSI| gives you reasonable candidates. cheers E.

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On Tue, 29 Jan 2019 at 15:51, JamalELH ***@***.***> wrote: Dear Eduardo, Thank you for your quick reply! My two case studies datasets are 80M and 30M respectively (each is 2 conditions in triplicates). I wanted to be more exhaustive with rMATS so I did not use a cutoff but considered all those with a significant (FDR). When I also used SUPPA but changed the quantifier upstream of it (salmon, rsem, kallisto), I found 100% overlap between the three when considering the events coordinates. But they differ in significance. Please refer to the attached venndiagram for more details about this point. As I would like also to overlap with MAJIQ, which is able to detect more complex, non-binary local splicing events + de novo junctions/exons, is there a way to make a common data structure for the outputs from SUPPA and MAJIQ. Should I also consider the p-value column in SUPPA output as significance to perfom an experimental validation? because I knew that this p-value is for within genes events, not for between genes? Thanks a lot for your help! [image: overlaps_je] <https://user-images.githubusercontent.com/46575288/51916458-52615100-23ab-11e9-94fb-c896326738f7.png> — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#47 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMWVB1lkh3XdWXQ8OMf4HR2Y2BWC1R3Eks5vIF_UgaJpZM4Z-JMR> .

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ArashDepp commented on August 13, 2024

Hi,

If you dont mind, could you please share the script for making SUPPA vs. Majiq comparison possible (as you mentioned in your comment). We used Kallitso + SUPPA2 for our research and need to defend this choice using Majiq for one of the reviewer.

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EduEyras commented on August 13, 2024

Hi, what we did was to extract the relevant junction from MAJIQ that it relates to the inclusion of the exon to compare with SUPPA. Each junctions from Majiq had a deltaPSI and probability to compare with the corresponding event from SUPPA. You can compare one of the inclusion junctions from MAJIQ with the SUPPA event. I can share the parsing of the MAJIQ output: perl parse_majiq_output.pl < LSVs.txt > junctions.txt more TRA2B_all_junctions.txt NXN ENSG00000167693 ENSG00000167693:882559-883010:target chr17 - 882318-882559 -3.19187430053e-06 1.9191538965e-11 NXN ENSG00000167693 ENSG00000167693:882559-883010:target chr17 - 881870-882559 3.64515609025e-16 1.33349943218e-18 ... This output contains in tab-separated columns the following info: GeneName, Gene_ID, LSV_ID, chr, strand, LSV_junction, deltaPSI_of_this_LSV_junction, Posterior_probability_of_this_LSV_junction With the output above you can identify the junction: chr17 - 882318-882559 that you can compare with the other methods. I know it is a bit convoluted, but that was the simplest way to compare events. I hope it helps E.

On Fri, 25 Mar 2022 at 07:19, ArashDepp ***@***.***> wrote: Hi, If you dont mind, could you please share the script for making SUPPA vs. Majiq comparison possible (as you mentioned in your comment). We used Kallitso + SUPPA2 for our research and need to defend this choice using Majiq for one of the reviewer. — Reply to this email directly, view it on GitHub <#47 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADCZKBZGRFF4EBXXGLVAEVLVBTE5FANCNFSM4GPYSMIQ> . You are receiving this because you modified the open/close state.Message ID: ***@***.***>

#Gene Name Gene ID LSV ID E(dPSI) per LSV junction P(|E(dPSI)|>=0.10) per LSV junction SAMPLE_1 E(PSI) SAMPLE_2 E(PSI) LSV Type A5SS A3SS ES Num. Junctions Num. 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;;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/659_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#NXN NXN ENSG00000167693 ENSG00000167693:722354-722785:target 2.41057765616e-06;-2.4105776546e-06 5.70041085696e-11;5.70041085696e-11 0.975;0.025 0.975;0.025 s|1e1.2o2|1e2.2o2|2e0 True False True 2 3 0 chr17 - 708487-722679;707046-722679 706922-707224;708308-708488;722354-722785 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/659_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#NXN NXN ENSG00000167693 ENSG00000167693:706922-707224:source -6.15425279615e-07;2.37155667882e-15;8.09035317687e-07 2.18001170226e-12;1.33349943221e-18;3.57829208e-12 0.025;0.025;0.975 0.025;0.025;0.975 t|1e0|2e1.1o2|2e2.1o2|2e2.2o2 True True True 3 3 0 chr17 - 707046-722679;707046-708450;707046-708308 706922-707224;708308-708488;708308-708488;722354-722785 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/659_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#NXN DDX20 ENSG00000064703 ENSG00000064703:112299268-112299362:source 4.04723073107e-07;-4.04723071553e-07 2.32897252364e-11;2.32897252364e-11 0.975;0.025 0.975;0.025 s|1e1.1o1|1e2.2o2 False False True 2 3 0 chr1 + 112299362-112302022;112299362-112303096 112299268-112299362;112302022-112302190;112303019-112303210 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/54_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#DDX20 DDX20 ENSG00000064703 ENSG00000064703:112303019-112303210:target -1.07296996686e-05;1.07296996701e-05 6.38478122721e-08;6.38478122721e-08 0.027;0.973 0.025;0.975 t|1e0|2e1.1o1|2e2.1o1 False True True 2 3 0 chr1 + 112299362-112303096;112302190-112303096 112299268-112299362;112302022-112302190;112303019-112303210 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/54_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#DDX20 MADD ENSG00000110514 ENSG00000110514:47296114-47296710:target -1.30898393418e-05;-0.142542459983;0.169706484123 2.18616918051e-08;0.978803966866;0.995372130758 0.027;0.167;0.804 0.025;0.027;0.969 t|1e1.1o2|1e2.1o1|1e3.1o1 False False True 3 4 0 chr11 + 47291301-47296114;47291797-47296114;47295527-47296114 47291223-47291457;47291699-47291797;47295378-47295527;47296114-47296710 ;;; 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;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47312161-47312367:source 3.697680963e-06;-3.69768096145e-06 3.09421159537e-10;3.09421159537e-10 0.025;0.975 0.026;0.974 s|1e1.2o2|1e2.1o1 False False True 2 3 0 chr11 + 47312367-47314094;47312367-47315434 47312161-47312367;47314078-47314147;47315434-47315534 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47349693-47350255:target 0.0071878930042;-0.0071878930042 0.0505840414832;0.0505840414832 0.145;0.855 0.209;0.791 t|1e0|2e1.1o2|2e2.1o2 False True True 2 3 0 chr11 + 47346128-47350209;47348358-47350209 47346022-47346586;47348289-47348737;47349693-47350255 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47317047-47317130:source -0.0258563631783;-0.00468158590589;0.13136548254 0.184371239569;0.0314671792609;0.805204868857 0.241;0.259;0.500 0.155;0.195;0.650 s|1e1.1o1|2e1.1o1|3e1.1o1 True True False 3 2 0 chr11 + 47317118-47317448;47317127-47317448;47317130-47317448 47317047-47317130;47317448-47317606;47317448-47317606;47317448-47317606 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47306492-47306745:source -0.00404275316805;4.97340673903e-06;0.000477930351032;7.37528551498e-06 0.0265785703373;1.23332461691e-10;0.00335100482351;3.4514462559e-10 0.544;0.025;0.434;0.025 0.492;0.026;0.449;0.026 s|1e1.2o3|1e1.3o3|2e1.2o3|2e1.3o3 True True False 4 2 1 chr11 + 47306616-47307002;47306616-47307029;47306745-47307002;47306745-47307029 47306492-47306745;47306822-47307141;47306822-47307141;47306822-47307141;47306822-47307141 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47346022-47346586:source -2.71078999606e-07;-0.00108449426835;0.00234790253971 2.60694526398e-11;0.00564752065594;0.013809692819 0.025;0.765;0.219 0.025;0.729;0.270 s|1e1.1o1|1e2.1o1|1e3.2o2|2e0 True False True 3 4 0 chr11 + 47346128-47346813;47346128-47348289;47346128-47350209 47346022-47346586;47346813-47346847;47348289-47348737;47349693-47350255 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47330142-47330250:source 6.04517691319e-13;-6.02963379084e-13 1.52681080211e-18;1.52681080211e-18 0.025;0.975 0.025;0.975 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr11 + 47330250-47330531;47330250-47330832 47330142-47330250;47330531-47330593;47330832-47330952 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47330832-47330952:target -4.15380744294e-13;4.16935056529e-13 2.8269541075e-19;2.8269541075e-19 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr11 + 47330250-47330832;47330593-47330832 47330142-47330250;47330531-47330593;47330832-47330952 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47315434-47315534:target -4.71059105411e-07;4.71059106965e-07 1.13417778193e-11;1.13417778193e-11 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr11 + 47312367-47315434;47314147-47315434 47312161-47312367;47314078-47314147;47315434-47315534 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47297450-47297753:source -9.52565243933e-09;9.52565399364e-09 5.24960071857e-11;5.24960071857e-11 0.025;0.975 0.025;0.975 s|1e1.1o2|1e1.2o2 False True False 2 2 0 chr11 + 47297753-47298256;47297753-47298283 47297450-47297753;47298256-47298414;47298256-47298414 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47297450-47297753:target 1.41990266421e-06;-1.41990266266e-06 4.89869211874e-07;4.89869211874e-07 0.025;0.975 0.025;0.975 t|1e1.1o2|1e2.6o6|2e0 False True True 2 3 0 chr11 + 47291301-47297450;47296710-47297450 47291223-47291457;47296114-47296710;47297450-47297753 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD MADD ENSG00000110514 ENSG00000110514:47306822-47307141:source -2.53578258828e-11;2.5359380195e-11 6.05496674725e-18;6.05496674725e-18 0.975;0.025 0.975;0.025 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr11 + 47307141-47307984;47307141-47310942 47306822-47307141;47307984-47308085;47310942-47311044 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/228_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MADD PGAM5 ENSG00000247077 ENSG00000247077:133294552-133294706:source -9.85388513101e-07;9.85388514655e-07 1.71351644654e-13;1.71351644654e-13 0.025;0.975 0.025;0.975 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr12 + 133294706-133295348;133294706-133297264 133294552-133294706;133295348-133295752;133297264-133299228 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/886_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PGAM5 PGAM5 ENSG00000247077 ENSG00000247077:133291339-133291622:target -3.69670722839e-11;3.69686265961e-11 2.54023768905e-15;2.54023768905e-15 0.975;0.025 0.975;0.025 t|1e0|2e1.1o1|2e2.1o1 False True True 2 3 0 chr12 + 133287653-133291444;133288275-133291444 133287405-133287653;133287668-133288275;133291339-133291622 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/886_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PGAM5 MAST2 ENSG00000086015 ENSG00000086015:46497850-46497932:source 5.64938495323e-06;-5.64938495167e-06 2.73574757669e-06;2.73574757669e-06 0.025;0.975 0.026;0.974 s|1e1.1o1|i False False False 1 2 1 chr1 + 46497932-46498002;46497932-46497933 46497850-46497932;46497933-46498001;46498002-46498076 ;; ;; (46497933, 46498001) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46499474-46499610:source 0.00419026654386;-0.00419026654386 0.0200378561803;0.0200378561803 0.863;0.137 0.919;0.081 s|1e1.1o2|1e1.2o2 False True False 2 2 1 chr1 + 46499610-46499745;46499610-46499748 46499474-46499610;46499745-46500092;46499745-46500092 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46348036-46348067:source 0.0631449145501;-0.0631449145501 0.449330185809;0.449330185809 0.025;0.975 0.125;0.875 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr1 + 46348067-46383011;46348067-46425058 46348036-46348067;46383011-46383205;46425058-46425149 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46499745-46500092:source -0.0165635897633;0.0172255674715;-3.4715633301e-11 0.121907263108;0.125994744831;1.95745348639e-14 0.922;0.077;0.025 0.837;0.162;0.025 s|1e1.1o3|1e1.2o3|1e1.3o3|2e0 True True False 3 2 1 chr1 + 46499938-46500210;46499938-46500499;46499938-46500501 46499745-46500092;46500210-46501796;46500210-46501796;46500210-46501796 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46425058-46425149:target -0.00191241814837;0.00191241814837 0.0117568243739;0.0117568243739 0.892;0.108 0.842;0.158 t|1e0|1e1.1o1|1e2.2o2 False False True 2 3 0 chr1 + 46348067-46425058;46383205-46425058 46348036-46348067;46383011-46383205;46425058-46425149 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46476402-46476781:source 0.00213002179745;-0.00213002179745 0.00322616371724;0.00322616371724 0.930;0.070 0.975;0.025 s|1e1.1o1|1e2.1o2|2e0 True False True 2 3 1 chr1 + 46476611-46485268;46476611-46487622 46476402-46476781;46485268-46485369;46487622-46487754 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46487622-46487754:target -0.000523853691168;0.00052385369117 0.00012998253844;0.00012998253844 0.055;0.945 0.025;0.975 t|1e1.1o2|1e2.1o1|2e0 False True True 2 3 1 chr1 + 46476611-46487622;46485369-46487622 46476402-46476781;46485268-46485369;46487622-46487754 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46473968-46474043:source 4.55609718508e-05;-4.55609718492e-05 2.49720154293e-05;2.49720154293e-05 0.960;0.040 0.964;0.036 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr1 + 46474043-46476402;46474043-46485268 46473968-46474043;46476402-46476781;46485268-46485369 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46485268-46485369:target -0.00014909183097;0.000149091830971 9.9233157462e-05;9.9233157462e-05 0.051;0.949 0.040;0.960 t|1e1.1o1|1e2.1o2 False False True 2 3 0 chr1 + 46474043-46485268;46476611-46485268 46473968-46474043;46476402-46476781;46485268-46485369 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 MAST2 ENSG00000086015 ENSG00000086015:46498002-46498076:target 3.86775130618e-07;-3.86775129063e-07 1.0784170941e-07;1.0784170941e-07 0.025;0.975 0.025;0.975 t|1e1.1o1|i False False False 1 2 1 chr1 + 46497932-46498002;46498001-46498002 46497850-46497932;46497933-46498001;46498002-46498076 ;; ;; (46497933, 46498001) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/103_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#MAST2 C19orf48 ENSG00000167747 ENSG00000167747:51301631-51302215:source 1.36590574743e-05;-0.000118628189381;6.94997037789e-05;7.46958999701e-05;7.77156117238e-16 3.74429428365e-12;0.000279713713985;1.73828067581e-07;1.79994789062e-10;1.33349943217e-18 0.025;0.877;0.047;0.026;0.025 0.027;0.871;0.048;0.033;0.025 t|1e1.1o2|1e2.1o2|1e2.2o2|2e2.1o2|2e2.2o2 True True True 5 3 0 chr19 - 51302215-51305474;51302215-51302551;51302215-51302529;51302181-51302551;51302181-51302529 51301631-51302215;51302529-51302614;51302529-51302614;51302529-51302614;51302529-51302614;51305246-51305515 ;;;;; ;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/660_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#C19orf48 C19orf48 ENSG00000167747 ENSG00000167747:51302529-51302614:source -1.05084757842e-12;1.05240189066e-12 5.35316394468e-24;5.35316394468e-24 0.975;0.025 0.975;0.025 t|1e1.1o2|1e2.1o1 False False True 2 3 0 chr19 - 51302614-51305474;51302614-51304440 51302529-51302614;51304440-51304606;51305246-51305515 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/660_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#C19orf48 C19orf48 ENSG00000167747 ENSG00000167747:51305246-51305515:target 7.77156838991e-16;-9.30402055991e-05;8.22109288383e-05 1.33349943217e-18;3.08757664738e-07;2.61631197429e-07 0.025;0.966;0.033 0.025;0.960;0.039 s|1e1.1o1|1e2.1o1|1e3.1o2|2e0 True False True 3 4 0 chr19 - 51304606-51305474;51302614-51305474;51302215-51305474 51301631-51302215;51302529-51302614;51304440-51304606;51305246-51305515 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/660_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#C19orf48 C19orf48 ENSG00000167747 ENSG00000167747:51305246-51305515:source 0.0274772292101;0.000189483583397;-0.0985620420933 0.16922369106;0.00010048445905;0.526719311745 0.248;0.025;0.751 0.364;0.043;0.590 t|1e0|2e0|2e1.1o1|2e2.1o1|2e3.1o1|3e0 False True True 3 4 0 chr19 - 51305514-51307829;51305514-51307724;51305514-51305711 51305246-51305515;51305711-51305907;51307724-51307815;51307829-51308186 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/660_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#C19orf48 CTNNB1 ENSG00000168036 ENSG00000168036:41265918-41266244:target 1.73801028762e-15;-1.83698053146e-16 2.75587948744e-30;2.75587948744e-30 0.975;0.025 0.975;0.025 t|1e0|2e1.1o1|2e2.1o1 False True True 2 3 0 chr3 + 41265572-41266017;41265812-41266017 41265512-41265572;41265681-41265812;41265918-41266244 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTNNB1 CTNNB1 ENSG00000168036 ENSG00000168036:41281151-41281227:target 1.63137286855e-15;-0.00954035534222;0.00581090394761 1.33349943217e-18;0.0704702987706;0.0399920904109 0.025;0.444;0.555 0.025;0.413;0.572 t|1e1.1o4|1e2.2o2|i False False True 2 3 1 chr3 + 41278200-41281151;41280845-41281151;41281150-41281151 41278079-41278958;41280624-41280845;41280846-41281150;41281151-41281227 ;;; ;;; (41280846, 41281150) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTNNB1 CTNNB1 ENSG00000168036 ENSG00000168036:41265512-41265572:source 6.7694511524e-16;8.77367119236e-16 1.33349943217e-18;1.33349943217e-18 0.025;0.975 0.025;0.975 s|1e1.1o1|1e2.2o2 False False True 2 3 0 chr3 + 41265572-41265681;41265572-41266017 41265512-41265572;41265681-41265812;41265918-41266244 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTNNB1 CTNNB1 ENSG00000168036 ENSG00000168036:41265512-41265572:target 7.77156117238e-16;7.77156117238e-16;-1.42278146692e-07;6.46027646126e-07;2.39682871537e-15;7.77156117238e-16 1.33349943217e-18;1.33349943217e-18;4.79179777795e-18;1.02630008784e-16;1.33349943218e-18;1.33349943217e-18 0.025;0.025;0.025;0.975;0.025;0.025 0.025;0.025;0.025;0.975;0.025;0.025 t|1e1.1o1|1e2.1o1|1e3.1o2|1e3.2o2|1e4.1o1|1e5.1o1 True False True 6 6 1 chr3 + 41237197-41265512;41240272-41265512;41241113-41265512;41241161-41265512;41241872-41265512;41263836-41265512 41236689-41237197;41240136-41240272;41240925-41241161;41240925-41241161;41241602-41241872;41263577-41263836;41265512-41265572 ;;;;;; ;;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTNNB1 CTNNB1 ENSG00000168036 ENSG00000168036:41278079-41278958:source -2.38787738095e-12;2.38943169319e-12 2.68099798222e-29;2.68099798222e-29 0.975;0.025 0.975;0.025 s|1e1.1o1|1e2.1o1|2e0|3e0|4e0 True False True 2 3 1 chr3 + 41278200-41279507;41278200-41281151 41278079-41278958;41279507-41279567;41281151-41281227 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTNNB1 CTNNB1 ENSG00000168036 ENSG00000168036:41280624-41280845:source -0.0957877544071;0.131946287781;7.77156117238e-16;-0.000393022248944 0.713720398108;0.953672318248;1.33349943217e-18;0.0010745898304 0.589;0.221;0.025;0.189 0.480;0.351;0.025;0.171 s|1e0|2e1.1o1|2e2.1o1|2e3.1o1|i True False True 3 4 1 chr3 + 41280845-41281151;41280845-41281310;41280845-41299823;41280845-41280846 41280624-41280845;41280846-41281150;41281151-41281227;41281310-41281936;41299823-41299975 ;;;; ;;;; (41280846, 41281150) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTNNB1 CTNNB1 ENSG00000168036 ENSG00000168036:41281310-41281936:target 0.0835971897279;-0.0835971897279 0.635883285535;0.635883285535 0.169;0.831 0.263;0.737 t|1e1.2o2|i False False False 1 2 1 chr3 + 41280845-41281310;41281309-41281310 41280624-41280845;41281228-41281309;41281310-41281936 ;; ;; (41281228, 41281309) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTNNB1 CYB5D2 ENSG00000167740 ENSG00000167740:4057968-4058154:source -2.78439708407e-06;2.78439708563e-06 1.41846236146e-06;1.41846236146e-06 0.975;0.025 0.974;0.026 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr17 + 4058154-4060160;4058154-4090501 4057968-4058154;4060160-4060991;4090501-4090605 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/660_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CYB5D2 CYB5D2 ENSG00000167740 ENSG00000167740:4053185-4053325:source -3.51176706539e-06;3.51176706695e-06 3.13796733349e-08;3.13796733349e-08 0.026;0.974 0.025;0.975 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr17 + 4053325-4054238;4053325-4057968 4053185-4053325;4054238-4054316;4057968-4058154 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/660_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CYB5D2 CYB5D2 ENSG00000167740 ENSG00000167740:4057968-4058154:target 1.64713782822e-09;-1.6471362739e-09 2.95305328164e-11;2.95305328164e-11 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr17 + 4053325-4057968;4054316-4057968 4053185-4053325;4054238-4054316;4057968-4058154 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/660_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CYB5D2 ULK4 ENSG00000168038 ENSG00000168038:41996114-41996299:source 2.69224930784e-07;-2.69224929229e-07 3.62842635617e-07;3.62842635617e-07 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1|2e0 False True True 2 3 0 chr3 - 41996299-42003508;41996299-42003418 41996114-41996299;42003418-42003486;42003508-42003922 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#ULK4 ULK4 ENSG00000168038 ENSG00000168038:42003508-42003922:target 1.73325899108e-05;-1.73325899092e-05 6.59900919967e-06;6.59900919967e-06 0.972;0.028 0.975;0.025 s|1e1.1o2|1e2.1o1 False False True 2 3 0 chr3 - 41996299-42003508;41979689-42003508 41979351-41979689;41996114-41996299;42003508-42003922 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/664_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#ULK4 PRKAR1B ENSG00000188191 ENSG00000188191:750966-751164:target -1.92758833841e-08;1.92758849384e-08 1.33978067667e-11;1.33978067667e-11 0.025;0.975 0.025;0.975 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr7 - 736739-750966;720363-750966 720193-720363;736350-736739;750966-751164 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/797_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PRKAR1B PRKAR1B ENSG00000188191 ENSG00000188191:750966-751164:source -0.000247687583467;0.000245846908689;2.29260029036e-09;2.29260029036e-09;2.29260029036e-09;2.29260029036e-09 0.00502667227605;0.00507252797164;2.7701984239e-10;2.7701984239e-10;2.7701984239e-10;2.7701984239e-10 0.341;0.654;0.025;0.025;0.025;0.025 0.331;0.664;0.025;0.025;0.025;0.025 t|1e1.1o1|1e2.1o1|1e3.1o1|1e4.1o2|1e4.2o2|1e5.1o1 True False True 6 6 0 chr7 - 751164-767227;751164-766847;751164-752692;751164-752559;751164-752485;751164-752051 750966-751164;752051-752209;752485-752577;752485-752577;752692-752844;766847-766978;767227-767287 ;;;;;; ;;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/797_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PRKAR1B PRKAR1B ENSG00000188191 ENSG00000188191:635783-635941:source -1.2043285688e-12;1.20588288103e-12 7.24823358944e-19;7.24823358944e-19 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr7 - 635941-645830;635941-642190 635783-635941;642190-642320;645830-645876 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/797_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PRKAR1B PRKAR1B ENSG00000188191 ENSG00000188191:720193-720363:source -5.15385664508e-09;5.15385819939e-09 6.3158553186e-12;6.3158553186e-12 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr7 - 720363-750966;720363-731177 720193-720363;731177-731431;750966-751164 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/797_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PRKAR1B PFKM ENSG00000152556 ENSG00000152556:48528504-48528612:target -1.15951397638e-08;1.15951413181e-08 5.04301743152e-11;5.04301743152e-11 0.975;0.025 0.975;0.025 t|1e2.1o1|2e1.5o5 False True True 2 3 0 chr12 + 48528059-48528504;48526840-48528572 48526651-48526840;48528015-48528059;48528504-48528612 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48531140-48531629:target 0.165824842638;-0.165824842638 0.966815757124;0.966815757124 0.137;0.863 0.300;0.700 t|1e0|2e1.1o1|2e2.1o1|3e0 False True True 2 3 0 chr12 + 48528821-48531504;48529166-48531504 48528726-48528821;48529074-48529166;48531140-48531629 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48536565-48536729:target -0.000965620337577;0.000965620337578 0.000503548536171;0.000503548536171 0.117;0.883 0.085;0.915 t|1e1.1o1|1e2.1o2 False False True 2 3 1 chr12 + 48535610-48536565;48535849-48536565 48535455-48535610;48535697-48536161;48536565-48536729 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48516503-48516642:target 2.79675339329e-12;2.79675339329e-12;2.79675339329e-12;2.35713153144e-07;1.80754090828e-07;2.79675339329e-12;-0.00289726642966;2.79675339329e-12;0.000304968338824;2.79675339329e-12;2.79675339329e-12 2.17965683711e-17;2.17965683711e-17;2.17965683711e-17;3.1530028686e-11;2.79376595505e-11;2.17965683711e-17;0.00746847972438;2.17965683711e-17;2.0832028648e-05;2.17965683711e-17;2.17965683711e-17 0.025;0.025;0.025;0.025;0.025;0.025;0.969;0.025;0.025;0.025;0.025 0.025;0.025;0.025;0.025;0.025;0.025;0.918;0.025;0.048;0.025;0.025 t|1e0|2e1.1o1|2e2.1o2|2e2.2o2|2e3.1o1|2e4.1o1|2e5.1o1|2e6.1o2|2e6.2o2|2e7.1o1|2e8.1o2|2e8.2o2 True True True 11 9 0 chr12 + 48499202-48516550;48499500-48516550;48499593-48516550;48499920-48516550;48501977-48516550;48512360-48516550;48513189-48516550;48513245-48516550;48513712-48516550;48516436-48516550;48516460-48516550 48498922-48499202;48499265-48499593;48499265-48499593;48499694-48499920;48501855-48501977;48512265-48512360;48513009-48513245;48513009-48513245;48513570-48513712;48516357-48516460;48516357-48516460;48516503-48516642 ;;;;;;;;;;; ;;;;;;;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48526651-48526840:source 6.08461059526e-16;9.45851174949e-16 3.20868896881e-26;3.20868896881e-26 0.975;0.025 0.975;0.025 s|1e0|2e0|3e0|4e0|5e1.1o1|5e2.2o2 True False True 2 3 0 chr12 + 48526840-48527098;48526840-48528572 48526651-48526840;48527098-48527263;48528504-48528612 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48534505-48534654:target -1.25378920896e-10;1.25380475209e-10 7.22655327611e-15;7.22655327611e-15 0.975;0.025 0.975;0.025 t|1e2.1o1|2e1.2o2 False True True 2 3 0 chr12 + 48533695-48534505;48516642-48534554 48516503-48516642;48533632-48533695;48534505-48534654 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48528726-48528821:source -0.194568436288;0.194568436288 0.997533960641;0.997533960641 0.799;0.201 0.609;0.391 s|1e1.1o1|1e2.2o3 False False True 2 3 0 chr12 + 48528821-48529074;48528821-48531504 48528726-48528821;48529074-48529166;48531140-48531629 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48533068-48533287:source -2.13890073859e-10;2.13891628171e-10 3.36385938569e-14;3.36385938569e-14 0.975;0.025 0.975;0.025 s|1e1.1o1|2e1.1o1 True True False 2 2 0 chr12 + 48533132-48533632;48533287-48533632 48533068-48533287;48533632-48533695;48533632-48533695 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48535455-48535610:source 0.00123037662764;-0.00123037662764 0.00861572578148;0.00861572578148 0.918;0.082 0.929;0.071 s|1e1.1o2|1e2.1o1 False False True 2 3 1 chr12 + 48535610-48535697;48535610-48536565 48535455-48535610;48535697-48536161;48536565-48536729 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48524146-48524219:target -3.46305452821e-11;3.46320995943e-11 2.47090550042e-16;2.47090550042e-16 0.975;0.025 0.975;0.025 t|1e1.2o2|1e2.1o1 False False True 2 3 0 chr12 + 48516642-48524146;48519345-48524146 48516503-48516642;48519108-48519345;48524146-48524219 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48528015-48528059:target -2.54194311593e-10;2.54195865905e-10 2.66310250528e-14;2.66310250528e-14 0.975;0.025 0.975;0.025 t|1e2.4o4|2e1.2o2 False True True 2 3 0 chr12 + 48527263-48528015;48516642-48528022 48516503-48516642;48527098-48527263;48528015-48528059 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48526651-48526840:target -2.96804922493e-15;4.52236145941e-15 2.17475636566e-23;2.17475636566e-23 0.975;0.025 0.975;0.025 t|1e1.6o6|1e2.1o1 False False True 2 3 0 chr12 + 48525176-48526651;48525994-48526651 48525099-48525176;48525802-48525994;48526651-48526840 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48535697-48536161:source 3.27131068854e-10;-3.27129514542e-10 2.91813537122e-18;2.91813537122e-18 0.975;0.025 0.975;0.025 s|1e1.1o1|1e2.1o1|2e0 True False True 2 3 0 chr12 + 48535849-48536565;48535849-48537536 48535697-48536161;48536565-48536729;48537536-48537597 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48516503-48516642:source 7.32249938053e-12;-8.50478078818e-11;7.32249938053e-12;7.32249938053e-12 3.53341892385e-17;5.68591567898e-16;3.53341892385e-17;3.53341892385e-17 0.025;0.975;0.025;0.025 0.025;0.975;0.025;0.025 s|1e0|2e1.1o1|2e2.1o1|2e3.2o2|2e4.2o2 True False True 4 5 0 chr12 + 48516642-48519108;48516642-48524146;48516642-48528022;48516642-48534554 48516503-48516642;48519108-48519345;48524146-48524219;48528015-48528059;48534505-48534654 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48525099-48525176:source 6.75942916264e-11;2.34716353846e-15;-1.25073071226e-10 4.40630335558e-18;1.33349943218e-18;7.40971683968e-18 0.025;0.025;0.975 0.025;0.025;0.975 s|1e0|2e0|3e0|4e0|5e0|6e1.1o1|6e2.1o1|6e3.1o1 True False True 3 4 0 chr12 + 48525176-48525462;48525176-48525802;48525176-48526651 48525099-48525176;48525462-48525703;48525802-48525994;48526651-48526840 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM PFKM ENSG00000152556 ENSG00000152556:48537536-48537597:target -2.19560918277e-12;2.197163495e-12 1.33349944113e-18;1.33349944113e-18 0.025;0.975 0.025;0.975 t|1e1.1o2|1e2.4o4 False False True 2 3 0 chr12 + 48535849-48537536;48536729-48537536 48535697-48536161;48536565-48536729;48537536-48537597 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/540_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFKM CARKD ENSG00000213995 ENSG00000213995:111287019-111287123:target 0.00129398448867;-0.00129398448867 0.009928770173;0.009928770173 0.685;0.315 0.728;0.272 t|1e1.1o1|i False False False 1 2 1 chr13 + 111286942-111287019;111287018-111287019 111286892-111286942;111286943-111287018;111287019-111287123 ;; ;; (111286943, 111287018) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD CARKD ENSG00000213995 ENSG00000213995:111286892-111286942:source 0.00094737459753;-0.000947374597528 0.00846743422763;0.00846743422763 0.740;0.260 0.767;0.233 s|1e1.1o1|i False False False 1 2 1 chr13 + 111286942-111287019;111286942-111286943 111286892-111286942;111286943-111287018;111287019-111287123 ;; ;; (111286943, 111287018) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD CARKD ENSG00000213995 ENSG00000213995:111290589-111292340:target -5.10347519008e-05;0.000217065886733;-2.57944358316e-05 1.45744623729e-05;0.00144281350673;0.00163746879603 0.036;0.107;0.854 0.030;0.121;0.852 t|1e2.1o1|2e1.2o2|2e2.1o1 True True True 3 3 1 chr13 + 111289596-111290589;111287935-111290725;111289596-111290725 111287815-111287935;111289476-111289596;111289476-111289596;111290589-111292340 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD CARKD ENSG00000213995 ENSG00000213995:111287815-111287935:source -4.03224550216e-05;4.03224550232e-05 0.00345743986091;0.00345743986091 0.833;0.167 0.831;0.169 s|1e0|2e1.1o1|2e2.2o2 True False True 2 3 1 chr13 + 111287935-111289476;111287935-111290725 111287815-111287935;111289476-111289596;111290589-111292340 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD CARKD ENSG00000213995 ENSG00000213995:111287019-111287123:source 0.000317398866118;-0.000317398866117 5.77103945482e-05;5.77103945482e-05 0.950;0.050 0.974;0.026 s|1e1.1o2|1e1.2o2 False True False 2 2 1 chr13 + 111287123-111287815;111287123-111287820 111287019-111287123;111287815-111287935;111287815-111287935 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD CARKD ENSG00000213995 ENSG00000213995:111274563-111274713:source -0.180886861784;0.182862734633;6.36978120286e-07 0.999031859018;0.998060435181;1.03009598278e-07 0.202;0.796;0.025 0.025;0.975;0.025 s|1e1.1o1|2e1.1o1|2e2.1o1 True True True 3 3 1 chr13 + 111274630-111276581;111274713-111276581;111274713-111279786 111274563-111274713;111276581-111276626;111276581-111276626;111279786-111279894 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD CARKD ENSG00000213995 ENSG00000213995:111267881-111267994:source 0.229898510567;-0.043736029546;-0.0434549980317 0.986778808725;0.313549569594;0.312102136451 0.638;0.177;0.186 0.864;0.064;0.072 s|1e1.1o1|1e2.1o1|1e3.1o1 False False True 3 4 0 chr13 + 111267994-111274563;111267994-111279786;111267994-111286892 111267881-111267994;111274563-111274713;111279786-111279894;111286892-111286942 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD CARKD ENSG00000213995 ENSG00000213995:111274563-111274713:target -9.2075092495e-06;9.20750925105e-06 1.53719311094e-06;1.53719311094e-06 0.975;0.025 0.974;0.026 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr13 + 111267994-111274563;111268121-111274563 111267881-111267994;111268008-111268121;111274563-111274713 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/857_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CARKD UMAD1 ENSG00000219545 ENSG00000219545:7841301-7841374:target 0.369410371911;-0.369911979821;8.31403423885e-09 0.999999970251;0.999999973919;2.49169252767e-11 0.504;0.495;0.025 0.864;0.134;0.025 t|1e1.1o1|1e2.1o1|1e3.1o1 False False True 3 4 0 chr7 + 7713084-7841301;7715839-7841301;7812085-7841301 7712940-7713084;7715733-7715839;7811992-7812085;7841301-7841374 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/862_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#UMAD1 UMAD1 ENSG00000219545 ENSG00000219545:7841301-7841374:source 0.000744287440402;-0.000257193394262;-6.48434258703e-05 0.00692656343537;0.0048129819349;2.4937706475e-05 0.725;0.239;0.035 0.755;0.227;0.027 s|1e1.1o1|1e2.1o1|1e3.1o1 False False True 3 4 0 chr7 + 7841374-7916912;7841374-8007330;7841374-8043538 7841301-7841374;7916912-7918854;8007330-8007651;8043538-8043689 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/862_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#UMAD1 UMAD1 ENSG00000219545 ENSG00000219545:7712940-7713084:source -0.383352233162;4.85005049404e-09;4.85005049404e-09;0.382554042892 0.99999998371;1.31312769936e-11;1.31312769936e-11;0.999999979813 0.513;0.025;0.025;0.484 0.140;0.025;0.025;0.857 s|1e1.1o1|1e2.1o1|1e3.1o1|1e4.1o1 False False True 4 5 0 chr7 + 7713084-7715733;7713084-7728966;7713084-7778342;7713084-7841301 7712940-7713084;7715733-7715839;7728966-7729091;7778342-7778453;7841301-7841374 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/862_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#UMAD1 GAN ENSG00000261609 ENSG00000261609:81398955-81399083:source -3.25085472401e-07;3.25085473955e-07 2.40062522296e-06;2.40062522296e-06 0.025;0.975 0.025;0.975 s|1e1.1o1|1e2.1o1 False False True 2 3 0 chr16 + 81399083-81405468;81399083-81410824 81398955-81399083;81405468-81405629;81410824-81410933 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/901_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#GAN CLDN7 ENSG00000181885 ENSG00000181885:7164140-7164464:target -3.48052137515e-07;3.48052139069e-07 2.04182579027e-07;2.04182579027e-07 0.975;0.025 0.975;0.025 s|1e0|1e1.1o1|1e2.1o1 False False True 2 3 0 chr17 - 7164045-7164140;7163855-7164140 7163222-7163855;7163961-7164045;7164140-7164464 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/758_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CLDN7 CTD-2033A16.1 ENSG00000261602 ENSG00000261602:69743777-69744004:source 7.77156117238e-16;7.77156117238e-16 1.33349943217e-18;1.33349943217e-18 0.025;0.975 0.025;0.975 s|1e1.1o1|i False False False 1 2 1 chr16 + 69744004-69744140;69744004-69744005 69743777-69744004;69744005-69744139;69744140-69744486 ;; ;; (69744005, 69744139) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/901_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTD-2033A16.1 CTD-2033A16.1 ENSG00000261602 ENSG00000261602:69744140-69744486:target 7.77156117238e-16;7.77156117238e-16 1.33349943217e-18;1.33349943217e-18 0.025;0.975 0.025;0.975 t|1e1.1o1|i False False False 1 2 1 chr16 + 69744004-69744140;69744139-69744140 69743777-69744004;69744005-69744139;69744140-69744486 ;; ;; (69744005, 69744139) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/901_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CTD-2033A16.1 TBL1XR1 ENSG00000177565 ENSG00000177565:176743740-176745618:target 8.07084755243e-09;-8.07084599812e-09 2.65659816419e-16;2.65659816419e-16 0.975;0.025 0.975;0.025 s|1e1.1o1|2e1.1o1 True True False 2 2 1 chr3 - 176743312-176744161;176743312-176743740 176737143-176743312;176737143-176743312;176743740-176745618 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/739_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#TBL1XR1 TBL1XR1 ENSG00000177565 ENSG00000177565:176816254-176816329:source 0.00145237385007;0.000144177780555;-0.00372789582084;0.000183649945303 0.0103388115523;0.00128393872889;0.0240384955963;0.000944667167465 0.747;0.080;0.117;0.055 0.796;0.090;0.045;0.067 t|1e0|1e1.1o1|1e2.1o1|1e3.1o1|1e4.1o1 False False True 4 5 0 chr3 - 176816329-176914909;176816329-176914128;176816329-176878659;176816329-176849151 176816254-176816329;176849151-176849237;176878659-176878776;176914128-176914272;176914909-176915261 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/739_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#TBL1XR1 TBL1XR1 ENSG00000177565 ENSG00000177565:176771561-176771706:source 3.51910557626e-11;-0.000957889462526;0.00089078806643 7.66829275977e-16;0.000696095909036;0.000721701136081 0.025;0.072;0.928 0.025;0.036;0.963 t|1e1.1o1|1e2.1o1|1e3.1o1 False False True 3 4 0 chr3 - 176771706-176914128;176771706-176816254;176771706-176782708 176771561-176771706;176782708-176782810;176816254-176816329;176914128-176914272 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/739_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#TBL1XR1 TBL1XR1 ENSG00000177565 ENSG00000177565:176816254-176816329:target 3.30291740908e-09;3.30291740908e-09;-0.000172093970579;0.00479773889276;-0.00371805213799 1.44095024283e-10;1.44095024283e-10;0.000443626875651;0.0315156951111;0.022315100062 0.025;0.025;0.066;0.788;0.144 0.025;0.025;0.053;0.866;0.077 s|1e1.1o1|1e2.1o1|1e3.1o1|1e4.1o1|1e5.1o1 False False True 5 6 0 chr3 - 176808968-176816254;176804829-176816254;176797733-176816254;176782810-176816254;176771706-176816254 176771561-176771706;176782708-176782810;176797242-176797733;176804753-176804829;176808939-176808968;176816254-176816329 ;;;;; ;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/739_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#TBL1XR1 TBL1XR1 ENSG00000177565 ENSG00000177565:176914909-176915261:target -0.00208508002952;0.0259692593277;0.00180438002068;1.69457501871e-05;-0.0579319208617 0.0135573852607;0.186169749172;0.012735983415;1.52416491295e-06;0.404148649942 0.262;0.040;0.534;0.025;0.160 0.205;0.144;0.585;0.027;0.040 s|1e1.1o1|1e2.1o1|1e3.1o1|1e4.1o1|1e5.1o1 False False True 5 6 0 chr3 - 176878776-176914909;176849237-176914909;176816329-176914909;176797733-176914909;176782810-176914909 176782708-176782810;176797242-176797733;176816254-176816329;176849151-176849237;176878659-176878776;176914909-176915261 ;;;;; ;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/739_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#TBL1XR1 TBL1XR1 ENSG00000177565 ENSG00000177565:176782708-176782810:source -0.0475295185692;6.3961648786e-07;0.0217565260858;3.52892397547e-09;3.52892397547e-09;-0.000157409713691;3.52892397547e-09 0.347652707101;1.0055037654e-08;0.144566377669;6.07321952706e-11;6.07321952706e-11;0.000651862512498;6.07321952706e-11 0.148;0.025;0.750;0.025;0.025;0.098;0.025 0.036;0.025;0.862;0.025;0.025;0.087;0.025 t|1e1.1o1|1e2.1o1|1e3.1o1|1e4.1o1|1e5.1o1|1e6.1o2|1e7.1o1 False False True 7 8 0 chr3 - 176782810-176914909;176782810-176914128;176782810-176816254;176782810-176808939;176782810-176804753;176782810-176797615;176782810-176796420 176782708-176782810;176796420-176796566;176797242-176797733;176804753-176804829;176808939-176808968;176816254-176816329;176914128-176914272;176914909-176915261 ;;;;;;; ;;;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/739_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#TBL1XR1 SLC2A3 ENSG00000059804 ENSG00000059804:8085242-8085775:source 1.16225505857e-08;1.16225505857e-08;-4.71231445812e-08 5.05505738668e-11;5.05505738668e-11;2.58795486801e-10 0.025;0.025;0.975 0.025;0.025;0.975 t|1e2.1o2|2e1.1o1|2e2.1o2 True True True 3 3 0 chr12 - 8085775-8086406;8085743-8088616;8085743-8086406 8085242-8085775;8086074-8086498;8086074-8086498;8088616-8088871 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/49_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#SLC2A3 SLC2A3 ENSG00000059804 ENSG00000059804:8088616-8088871:target -5.40357339596e-09;5.40357495027e-09 7.51871143258e-12;7.51871143258e-12 0.975;0.025 0.975;0.025 s|1e1.1o1|1e2.2o2 False False True 2 3 0 chr12 - 8086498-8088616;8085743-8088616 8085242-8085775;8086074-8086498;8088616-8088871 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/49_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#SLC2A3 PXK ENSG00000168297 ENSG00000168297:58398628-58400254:source -3.86071679577e-09;-3.4254334628e-09;-5.662185804e-11;8.12505228767e-07 5.22249160856e-13;5.38577747962e-13;8.28128636015e-15;1.44062673498e-09 0.025;0.025;0.025;0.975 0.025;0.025;0.025;0.975 s|1e1.1o2|1e1.2o2|1e2.1o1|1e3.1o1|2e0 True True True 4 4 0 chr3 + 58398690-58406263;58398690-58406266;58398690-58409188;58398690-58410479 58398628-58400254;58406263-58406687;58406263-58406687;58409188-58409221;58410479-58411748 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58318607-58318817:source -0.000257726103057;-0.000141935224961;0.000340246394657;-6.35803405707e-06 0.00121701668234;5.23588401357e-05;0.000448049825961;1.73617445299e-05 0.923;0.041;0.025;0.031 0.905;0.026;0.051;0.030 s|1e1.1o1|1e2.1o1|1e3.1o1|1e4.1o1 False False True 4 5 0 chr3 + 58318817-58351601;58318817-58355158;58318817-58368241;58318817-58376309 58318607-58318817;58351601-58351651;58355158-58355205;58368241-58368427;58376309-58376386 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58368241-58368427:source 9.09777014561e-07;-9.09777013006e-07 3.96435772036e-07;3.96435772036e-07 0.975;0.025 0.975;0.025 s|1e0|2e1.1o1|2e2.1o1 True False True 2 3 0 chr3 + 58368427-58376309;58368427-58380725 58368241-58368427;58376309-58376386;58380725-58380829 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58368241-58368427:target 0.00207535096647;-0.00207535096646 0.00954928089919;0.00954928089919 0.025;0.975 0.080;0.920 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr3 + 58318817-58368241;58355205-58368241 58318607-58318817;58355158-58355205;58368241-58368427 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58395817-58395886:source -0.000122060214899;0.0917401282303;-0.0305964257104;-1.63235854427e-09 2.40948605338e-07;0.590027644488;0.21401043912;3.86473912139e-16 0.038;0.546;0.400;0.025 0.025;0.673;0.311;0.025 s|1e1.1o1|1e2.1o2|1e2.2o2|1e3.1o1 False True True 4 4 1 chr3 + 58395886-58397352;58395886-58398628;58395886-58398631;58395886-58410479 58395817-58395886;58397352-58397389;58398628-58400254;58398628-58400254;58410479-58411748 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58395259-58395345:source 0.000276425999809;-0.000276425999807 9.03197261342e-06;9.03197261342e-06 0.953;0.047 0.975;0.025 s|1e1.1o1|1e2.1o2 False False True 2 3 1 chr3 + 58395345-58395817;58395345-58398628 58395259-58395345;58395817-58395886;58398628-58400254 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58410479-58411748:target -2.90422781844e-08;7.46416181845e-07;-5.57807622332e-11;-2.60178768808e-11 4.01391215286e-12;6.35580538273e-10;3.89268511412e-15;3.03442834011e-15 0.025;0.975;0.025;0.025 0.025;0.975;0.025;0.025 t|1e1.1o1|1e2.1o2|1e3.1o4|1e4.1o1 False False True 4 5 0 chr3 + 58395886-58410479;58398690-58410479;58406295-58410479;58409221-58410479 58395817-58395886;58398628-58400254;58406263-58406687;58409188-58409221;58410479-58411748 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58398628-58400254:target -3.45069003956e-05;0.110717651868;-0.0127076446648;-2.00548419789e-05 9.16829706047e-09;0.699831203188;0.0887806340807;2.72515315573e-09 0.030;0.540;0.389;0.028 0.025;0.677;0.319;0.025 t|1e1.1o1|1e2.1o1|2e2.1o1|2e3.1o1 True True True 4 4 1 chr3 + 58395345-58398628;58395886-58398628;58395886-58398631;58397389-58398631 58395259-58395345;58395817-58395886;58395817-58395886;58397352-58397389;58398628-58400254 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58355158-58355205:target -0.000722487584498;0.000722487584499 0.00169738655314;0.00169738655314 0.063;0.937 0.027;0.973 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr3 + 58318817-58355158;58351651-58355158 58318607-58318817;58351601-58351651;58355158-58355205 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58380725-58380829:target 1.930403869e-07;-1.93040385346e-07 1.30903747271e-08;1.30903747271e-08 0.025;0.975 0.025;0.975 t|1e1.2o2|1e2.1o1 False False True 2 3 0 chr3 + 58368427-58380725;58377574-58380725 58368241-58368427;58377500-58377574;58380725-58380829 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58351601-58351651:target -8.39887643208e-07;8.39887644762e-07 1.27233315592e-07;1.27233315592e-07 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr3 + 58318817-58351601;58319351-58351601 58318607-58318817;58319033-58319351;58351601-58351651 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PXK ENSG00000168297 ENSG00000168297:58376309-58376386:target -0.000309704628216;0.000309704628217 0.000667065837283;0.000667065837283 0.054;0.946 0.032;0.968 t|1e1.1o1|1e2.2o2 False False True 2 3 0 chr3 + 58318817-58376309;58368427-58376309 58318607-58318817;58368241-58368427;58376309-58376386 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/667_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PXK PDHB ENSG00000168291 ENSG00000168291:58419495-58419584:target 7.77156117238e-16;-0.00655102455407;0.0133564715524;-1.94970155171e-15 1.33349943217e-18;0.0272035097873;0.0498685894429;1.33349943218e-18 0.025;0.930;0.055;0.025 0.025;0.911;0.081;0.025 s|1e1.1o1|2e1.1o1|2e2.1o1|i True True True 3 3 1 chr3 - 58419411-58419516;58419411-58419495;58417711-58419495;58419494-58419495 58417604-58417711;58419358-58419411;58419358-58419411;58419412-58419494;58419495-58419584 ;;;; ;;;; (58419412, 58419494) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/666_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PDHB PDHB ENSG00000168291 ENSG00000168291:58419358-58419411:source 7.77156117238e-16;9.29807891779e-13;-3.98797993116e-14 1.33349943217e-18;3.44008773726e-35;1.33349943234e-18 0.025;0.975;0.025 0.025;0.975;0.025 t|1e1.1o2|1e1.2o2|i True False False 2 2 1 chr3 - 58419411-58419516;58419411-58419495;58419411-58419412 58419358-58419411;58419412-58419494;58419495-58419584;58419495-58419584 ;;; ;;; (58419412, 58419494) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/666_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PDHB PDHB ENSG00000168291 ENSG00000168291:58415855-58415965:target 7.77156117238e-16;7.77156117238e-16 1.33349943217e-18;1.33349943217e-18 0.025;0.975 0.025;0.975 s|1e0|2e1.1o2|2e1.2o2 True True False 2 2 0 chr3 - 58415668-58415855;58415526-58415855 58415435-58415668;58415435-58415668;58415855-58415965 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/666_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PDHB PDHB ENSG00000168291 ENSG00000168291:58416570-58416669:target 7.77159004252e-16;7.77153230223e-16 1.33349943217e-18;1.33349943217e-18 0.025;0.975 0.025;0.975 s|1e1.1o1|i False False False 1 2 1 chr3 - 58416515-58416570;58416569-58416570 58416384-58416515;58416516-58416569;58416570-58416669 ;; ;; (58416516, 58416569) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/666_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PDHB PDHB ENSG00000168291 ENSG00000168291:58414079-58414341:target 7.7700851455e-16;7.77303719925e-16 3.44034089294e-32;3.44034089294e-32 0.975;0.025 0.975;0.025 s|1e1.1o1|2e1.1o1 True True False 2 2 0 chr3 - 58413906-58414200;58413906-58414079 58413357-58413906;58413357-58413906;58414079-58414341 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/666_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PDHB PDHB ENSG00000168291 ENSG00000168291:58417604-58417711:source 0.000165341790734;-0.000165341790732 5.66466574104e-09;5.66466574104e-09 0.065;0.935 0.073;0.927 t|1e1.2o2|1e2.1o1 False False True 2 3 0 chr3 - 58417711-58419495;58417711-58419358 58417604-58417711;58419358-58419411;58419495-58419584 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/666_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PDHB PDHB ENSG00000168291 ENSG00000168291:58416384-58416515:source 7.77156117238e-16;7.77156117238e-16 1.33349943217e-18;1.33349943217e-18 0.025;0.975 0.025;0.975 t|1e1.1o1|i False False False 1 2 1 chr3 - 58416515-58416570;58416515-58416516 58416384-58416515;58416516-58416569;58416570-58416669 ;; ;; (58416516, 58416569) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/666_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PDHB CBLL1 ENSG00000105879 ENSG00000105879:107389325-107389761:source -0.000352032710008;4.81527475678e-05;0.00025631437942 0.00179470024761;0.0018315593271;0.000131908715774 0.241;0.671;0.085 0.224;0.673;0.102 s|1e1.1o1|1e2.1o2|1e2.2o2|2e0 True True True 3 3 0 chr7 + 107389492-107392990;107389492-107393856;107389492-107393859 107389325-107389761;107392990-107393062;107393856-107393956;107393856-107393956 ;;; ;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/194_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CBLL1 CBLL1 ENSG00000105879 ENSG00000105879:107398588-107402112:target 8.6972137631e-10;-8.69719821998e-10 2.41347535201e-13;2.41347535201e-13 0.025;0.975 0.025;0.975 t|1e1.1o2|1e2.1o2 False False True 2 3 0 chr7 + 107394423-107398588;107395936-107398588 107394340-107394628;107395863-107396037;107398588-107402112 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/194_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CBLL1 CBLL1 ENSG00000105879 ENSG00000105879:107394340-107394628:source -4.00180694291e-11;4.00196237414e-11 6.01179305804e-16;6.01179305804e-16 0.975;0.025 0.975;0.025 s|1e1.1o1|1e2.1o1|2e0 True False True 2 3 0 chr7 + 107394423-107395863;107394423-107398588 107394340-107394628;107395863-107396037;107398588-107402112 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/194_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CBLL1 CBLL1 ENSG00000105879 ENSG00000105879:107389325-107389761:target -1.72649123024e-08;1.72649138567e-08 7.64564197086e-11;7.64564197086e-11 0.975;0.025 0.975;0.025 t|1e1.1o1|1e2.1o1 False False True 2 3 0 chr7 + 107384621-107389325;107385282-107389325 107384142-107384621;107384882-107385282;107389325-107389761 ;; ;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/194_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CBLL1 CBLL1 ENSG00000105879 ENSG00000105879:107393856-107393956:target -0.000213678945112;0.000444023372767;0.000252103707537;-1.61786799334e-05 0.00183451876006;0.00168963284388;0.000185614939582;3.7342631377e-09 0.701;0.176;0.089;0.027 0.691;0.199;0.105;0.025 t|1e1.1o2|1e2.1o1|2e1.1o2|2e2.1o1 True True True 4 3 1 chr7 + 107389492-107393856;107393062-107393856;107389492-107393859;107393062-107393859 107389325-107389761;107389325-107389761;107392990-107393062;107392990-107393062;107393856-107393956 ;;;; ;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/194_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#CBLL1 PFDN6 ENSG00000204220 ENSG00000204220:33258493-33258710:target -1.69125045817e-13;-0.000819849004535;0.000409331788928;0.000133811729196 1.33349943287e-18;0.00270296743829;0.00232108267003;7.60892780948e-05 0.025;0.204;0.661;0.124 0.025;0.187;0.668;0.136 t|1e1.1o1|1e2.1o1|1e3.1o1|i False False True 3 4 1 chr6 + 33257697-33258493;33258021-33258493;33258227-33258493;33258492-33258493 33257547-33257697;33257951-33258021;33258103-33258227;33258228-33258492;33258493-33258710 ;;;; ;;;; (33258228, 33258492) file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/840_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi.html#PFDN6 PFDN6 ENSG00000204220 ENSG00000204220:33257079-33257405:source 9.79679637919e-05;-0.000338218186596;0.0047490015532;1.74954726408e-05;-9.54858716105e-05 0.00168226173344;1.11102706454e-05;0.031153862625;2.49333056817e-08;6.71151526553e-07 0.319;0.049;0.577;0.025;0.036 0.325;0.025;0.639;0.028;0.025 s|1e1.1o3|1e1.3o3|2e1.1o3|2e1.2o3|2e1.3o3 True True False 5 2 1 chr6 + 33257397-33257547;33257397-33257619;33257405-33257547;33257405-33257552;33257405-33257619 33257079-33257405;33257547-33257697;33257547-33257697;33257547-33257697;33257547-33257697;33257547-33257697 ;;;;; ;;;;; file:///genomics/users/jcarlos/majiq/TRA2//genomics/users/jcarlos/majiq/TRA2/voila_outdir_show_all//summaries/840_SAMPLE_1_SAMPLE_2.deltapsi_quantify_deltapsi

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