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Christian Schudoma's Projects

fifa icon fifa

Extract specific sequences from fasta/fastq files.

figaro icon figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

fortuna icon fortuna

Python script for finding open reading frames (ORFs) in nucleotide sequences

gapseq icon gapseq

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

gffextract icon gffextract

Extract feature sequences from gff/fasta resources.

hisat2 icon hisat2

Graph-based alignment (Hierarchical Graph FM index)

mapseq icon mapseq

highthroughput rRNA sequence classification and OTU mapping for metagenomic samples

medi icon medi

Metagenomic Estimation of Dietary Intake and Content.

milk icon milk

MILK: Machine Learning Toolkit

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

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