cthoyt/onto2nx

Converts OWL ontologies and OBO to NetworkX Graphs

This Project is No Longer Maintained

This project is not being maintained. Please see the following alternatives:

• https://github.com/related-sciences/nxontology (Custom parsing of OWL into NetworkX graphs)
• https://github.com/dhimmel/obonet/ (Custom parsing of OBO into NetworkX graphs)
• https://github.com/althonos/pronto (General parsing of OBO + OWL)

Legacy Information

Converts OWL ontologies and OBO to NetworkX Graphs.

As of its first version, onto2nx currently relies on the code of a stripped-down version of OntoSpy. We would like to give a huge thank you to Michele Pasin for all of his hard work and making it available under the GPL 3.0 license so we could use it too.

Installation

PyBEL can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install onto2nx

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/cthoyt/onto2nx.git