Scripts for running different algorithms using Slurm in the Cluster.
- ScriptExample.sbs -> classical parameters to slurm scripts.
- script_bwa.sbs -> for exomes alignment with BWA mem (iterative).
- script_fastqc -> QC of fastq (iterative).
- Slurm_Rscripts -> structure for a Rscript in slurm
- SingeCell_CellRanger_Mkfastq.sbs -> 10X demultiplexing script.
- SingeCell_CellRanger_Counts.sbs -> 10X alignment (STAR) and secondary analysis.
Install_RPackages_Cluster.R -> how to install packages in a specific user folder (and add it to .Rprofile).