daniel-m/gib_journal_club-ca_kinetics

Proposals for Biophysics Journal Club on Calcium Kinetics

% Journal club on Calcium ion kinetics on muscle physiology: A proposal for a paper reading list % Daniel Mejía Raigosa at Biophysics Group - Universidad de Antioquia; Version 1.0 % Feb 21, 2017

Motivation

To bring a general view of the state of the art on Calcium ion kinetics on muscle physiology I suggest the set of lectures presented in this document. The lectures are aimed to present a general view of skeletal muscle kinetcis and the experimental methods for iin-vivo Calcium imaging, then read about the plausibility of develop mathematical models for biochemical reactions and complex biological systems. The last couple of readings present two different mathematical models for simulate Calcium kinetics inside muscle fibers of frog.

Paper list

Here are two lists, a main list and complementary readings list. The main list is presented in the suggested order and constitute the main core of the readings. The complementary list complement papers on the main list.

Main list

1. The Excitation–contraction Coupling Mechanism in Skeletal Muscle [@Calderon2014],

   • author: Juan C. Calder'{o}n, Pura Bola~{n}os, Carlo Caputo
   • year: 2014
   • journal: Biophysical Reviews
   • publisher: Springer Berlin Heidelberg
   • volume: 6
   • number: 1
   • pages: 133–160
   • doi: 10.1007/s12551-013-0135-x

2. Seeing Is Believing! Imaging Ca$^{2+}$-Signaling Events in Living Cells [@McGeown2010],

   • author: J. Graham McGeown
   • year: 2010
   • journal: Experimental Physiology
   • volume: 95
   • number: 11
   • pages: 1049-1060
   • doi: 10.1113/expphysiol.2010.052456

3. Practical Aspects of Measuring Intracellular Calcium Signals With Fluorescent Indicators [@Kao2010],

   • author: Joseph P. Y. Kao, Gong Li, Darryl A. Auston
   • year: 2010
   • journal: Methods in cell biology
   • volume: 99
   • pages: 113–52
   • doi: 10.1016/B978-0-12-374841-6.00005-0

4. Complex Biology With No Parameters [@Bailey2001],

   • author: J. E. Bailey
   • year: 2001
   • journal: Nature Biotechnology
   • volume: 19
   • number: 6
   • pages: 503–504

5. Model of Calcium Movements During Activation in the Sarcomere of Frog Skeletal Muscle cite {Cannell1984},

   • author: M.B. Cannell, D.G. Allen
   • year: 1984
   • journal: Biophysical Journal
   • publisher: Elsevier
   • volume: 45
   • number: 5
   • pages: 913–925
   • doi: 10.1016/S0006-3495(84)84238-1

6. Model of Calcium Diffusion, Binding and Membrane Transport in the Sarcomere of Frog Skeletal Muscle. [@Holly1989],

• author: M. Holl'{y}, J. Poledna
• year: 1989
• journal: General physiology and biophysics
• volume: 8
• number: 6
• pages: 539–553

Complementary readings

1. Polycarboxylate Fluorescent Indicators As Ion Concentration Probes in Biological Systems [@Katerinopoulos2002],
   • author: H. E. Katerinopoulos, E. Foukaraki
   • year: 2002
   • journal: Current Medicinal Chemistry
   • volume: 9
   • number: 2
   • pages: 275–306
   • complements reading 3

2. **J. Calder\'on, P. Bola\~nos and C. Caputo**. The Excitation–contraction Coupling Mechanism in Skeletal Muscle, *Biophysical Reviews*, 6(1), pp. 133-160, [doi: 10.1007/s12551-013-0135-x](http://dx.doi.org/10.1007/s12551-013-0135-x), 2014, .
3. **J. G. McGeown**. Seeing Is Believing! Imaging Ca$^2+$-Signaling Events in Living Cells., *Experimental Physiology*, 95(11), pp. 1049-1060, [doi: 10.1113/expphysiol.2010.052456](http://dx.doi.org/10.1113/expphysiol.2010.052456), 2010.
4. **J. P. Y. Kao, G. Li and D. A. Auston**. Practical Aspects of Measuring Intracellular Calcium Signals With Fluorescent Indicators., *Methods in cell biology*, 99, pp. 113-52, [doi: 10.1016/B978-0-12-374841-6.00005-0](http://dx.doi.org/10.1016/B978-0-12-374841-6.00005-0), 2010, .
5. **J. E. Bailey**. Complex Biology With No Parameters, *Nature Biotechnology*, 19(6), pp. 503-504, 2001, .
6. **M. Holl\'y and J. Poledna**. Model of Calcium Diffusion, Binding and Membrane Transport in the Sarcomere of Frog Skeletal Muscle., *General physiology and biophysics*, 8(6), pp. 539-553, 1989, .
7. **H. E. Katerinopoulos and E. Foukaraki**. Polycarboxylate Fluorescent Indicators As Ion Concentration Probes in Biological Systems, *Current Medicinal Chemistry*, 9(2), pp. 275-306, 2002, .