danner/s4s-imaging-stack

Sync for Science stack

Use and deploy this stack

To run it, you need Docker >= 17.06.0, and docker-compose

Clone this repo with submodules

git clone --recursive https://github.com/RSNA/s4s-stack

Update submodules after git pull

git submodule update --init --recursive

Pull or build

docker-compose pull  # pull the images from Docker Hub
# *or* ...
docker-compose build # build the images yourself

To launch the stack:

docker-compose up

SMART server

By default, the token instrospection service uses the SMART server located at https://portal-stu3.demo.syncfor.science/. To remove this external dependence, you can run the stack with the HAPI FHIR and SMART servers:

docker-compose -f docker-compose.yml -f docker-compose.override.yml -f docker-compose.smart.yml up

Wait for the services to install then load sample data:

docker-compose -f docker-compose.loaddata.yml up

S4s-stack will run without any modications to the yml files. Optionally, if you like use your preferred local port and volume mappings, edit docker-compose.override.yml and docker-compose.loaddata.yml.

By default, you'll have servers running at ports:

• 389: LDAP server
• 5432: Postgres
• 9990: Wildfly Administration Console
• 9090: Archive console
• 11112: dcm4chee server (SCP)
• 2575: HL7 server
• 4567: DICOM-RS Broker service
• 11122: DICOM-RS Broker SCP
• 9004: Introspection service
• 9006: SMART server (if included)

The following Docker volumes will be created when deployed:

• ldap-vol: LDAP data directory
• slapd-vol: Slapd data directory
• postgres-data-vol : Postgres data directory
• wildfly-vol: Wildfly directory
• dcm4chee-arc-vol: Dicom storage
• dcmrs-broker-vol: Cache directory for RS Broker
• s4s-fhir-broker-vol: FHIR Broker data

Running tests

To test the stack, refer to the s4s-fhir-broker project.

Update submodules to latest on GH branches

git submodule update --remote

Deploying on S4S AWS instance

docker-compose -f docker-compose.yml -f deploys/demo.syncfor.science/docker-compose.yml up

The following services will be made publicly available:

• imaging-broker.demo.syncfor.science: the FHIR broker
• dicom-broker.demo.syncfor.science: the DICOM broker